Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 54.3 bits (129), Expect = 5e-12
 Identities = 75/338 (22%), Positives = 137/338 (40%), Gaps = 33/338 (9%)

Query: 8   KAELKALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQASFQLERMV 67
           K E   +F +   +L + G  V    L+    + ++ +   ++V++      + ++   +
Sbjct: 9   KKEFYHIFRDRRTMLILLGMPVVQIILFGFAISTEV-KNVRLAVLDPSNDVVTRKIIDRL 67

Query: 68  DATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAGDASYFLV 127
           DA+    +  R H+  + + AF   K+   +V  E F   L         Y GDA   L+
Sbjct: 68  DASEYFTVTTRFHSPQEMETAFRKNKIDMAIVFGERFADGL---------YTGDARVQLI 118

Query: 128 YGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRMGYVDYVV 187
                  ++ +    AA    S     G+ M       S  + ++K  +NP+M      V
Sbjct: 119 VDATDPNMSTSQSNYAASIVSSA----GQEMLPPNVFVSRLTPDVKLLYNPQMKSAYNFV 174

Query: 188 PAVFVLILQQTLIMAAGLMVGTQKQ-GHGYWSRVAPAKLLL----------VRSFVLVAV 236
           P V  LIL     M   + +  +K+ G      V+P + L           V SFV +  
Sbjct: 175 PGVMGLILMLICAMMTSISIVREKETGTMEVLLVSPVRPLFIVLAKAVPYFVLSFVNLTT 234

Query: 237 YYLLSLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVV- 295
             LLS++      D+  V +L     L+ + L F+     +G+ + +VT  +    L   
Sbjct: 235 ILLLSVFVL----DVPVVGSLFW---LVMVSLLFIFVSLALGLLISSVTSTQVAAMLASG 287

Query: 296 LISSMPLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQ 333
           +I  MP +  +G I+P+E +P  L  ++   P+   IQ
Sbjct: 288 MILMMPTMVLSGMIFPVESMPVILRAISDIIPARWYIQ 325