Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., ABC-2 type transporter (RefSeq) from Shewanella sp. ANA-3

 Score = 86.7 bits (213), Expect = 1e-21
 Identities = 87/375 (23%), Positives = 160/375 (42%), Gaps = 35/375 (9%)

Query: 3   LFELFKAELKALFTNP----VVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQ 58
           +  L + EL+AL+ +P    ++      G++   +L+    +  +PR+  V++V+ D SQ
Sbjct: 31  IIALVRRELRALWRDPWQLALISYIPLLGILCLWWLF----SAGLPRQLPVAIVDQDHSQ 86

Query: 59  ASFQLERMVDATPQVKIVQRDHT-IADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLA 117
            S  L R + A P  +   R  T +  A  A    +V  ++V P    KDLL G  PT+ 
Sbjct: 87  LSRMLTRQLKANPVTE--PRSFTDLPSAVAAMQQAQVYAVVVFPHDMKKDLLTGHKPTID 144

Query: 118 YAGDASYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFN 177
              ++ + LV   +   +  + G    Q    + ++ G P +  A + SP  +     FN
Sbjct: 145 VRYNSQFLLVGKLLSSQIQLSLGDGLLQVAGLKQLMTGTPKSQVAVNLSPVKSQTTALFN 204

Query: 178 PRMGYVDYVVPAVFVLILQ--QTLIMAAG------LMVGTQKQG------HGYWSRVAPA 223
               Y+ ++VP V V + Q    L+MA        L     ++G        +W +V  A
Sbjct: 205 RNNNYIGFLVPPVLVALWQLLSMLVMANSLNRELHLNAAQSEEGISNRLTEHFWPKVL-A 263

Query: 224 KLLLVRSFVLVAVYYLLSLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGA 283
           K+LL    +++   ++L+  Y   +    G   L     LI LL  + L   F+ + +  
Sbjct: 264 KILLFTPILMLQGGFILAWLYLYLALPFAGSLALLLVAQLIMLLAVWSLVL-FIFVLM-- 320

Query: 284 VTPRRELVTLVVLISSM--PLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQM 341
               R+   ++   +++  P     G  +P   +P    W     PS+  I+  + +   
Sbjct: 321 ----RDSARVISFCTALFAPAFAFMGITFPTHEMPQLAQWWRLIMPSSHYIESHVSVVSY 376

Query: 342 AASWSTIAPKWTLLW 356
            A+WST+A + +  W
Sbjct: 377 GATWSTLAQQLSSYW 391