Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., ABC-2 type transporter (RefSeq) from Shewanella sp. ANA-3

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 76/316 (24%), Positives = 135/316 (42%), Gaps = 22/316 (6%)

Query: 18  PVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQASFQLERMVDATPQVKIVQ 77
           P+V L +FG  +          A+ +P      +VNL  S  S  L + V+AT  V    
Sbjct: 30  PLVQLMLFGYAINTD-------ARHLP----AGLVNLSDSAYSRALVKAVEATQVVDFKH 78

Query: 78  RDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAGDASYFLVYGTIVEGLAQ 137
           R  + A+A  A    +V  +L +      D  L + P  A+AG A +    G   + L  
Sbjct: 79  RYLSAAEADAAITRGEVKAVLYLGADL--DERLVRHP--AFAGQAYFAEPVG---QWLVD 131

Query: 138 AGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRMGYVDYVVPAVFVLILQQ 197
              T+ A T  S   +  + +A  A   +P S  +   FNP    V  +VP +  +IL  
Sbjct: 132 GSDTVVASTIRSLRQMPLDEIAGRAVKSNPPSFEVVQYFNPEQRSVVNIVPGLLGVILTM 191

Query: 198 TLIM-AAGLMVGTQKQGHGYW---SRVAPAKLLLVRSFVLVAVYYLLSLYYFGASFDLHG 253
           T++M  +  +V  ++QG+  +   + V P +L+L +    V V ++       A   L  
Sbjct: 192 TMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVLVGFVQLAIILSAGHLLFA 251

Query: 254 VNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVLISSMPLIFTAGFIWPLE 313
           V      + +    + F+ A   +G+ +  +   +     + +   +P I  +GF++P E
Sbjct: 252 VPIRGGLDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPSILLSGFMFPYE 311

Query: 314 MIPAPLVWLAQCFPST 329
            +P    W+A+  P+T
Sbjct: 312 AMPVAAQWIAEALPAT 327