Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 907 a.a., ABC-type multidrug transport system, permease component from Pseudomonas fluorescens FW300-N2E2

 Score = 52.0 bits (123), Expect = 7e-11
 Identities = 75/364 (20%), Positives = 144/364 (39%), Gaps = 32/364 (8%)

Query: 32  ILLAVSIWWIFSQGIARD---LPFGVVDFSHSQLSRQLIREVDATSTLLVSQHFASVDEA 88
           +L A+ +  +F  GI+ D   L F   D   S  SR  +    ++         +   E 
Sbjct: 561 LLGALFMMVVFGFGISLDVEKLAFAAYDQDQSPQSRAYLEAFRSSRYFEEQPIISDAKEL 620

Query: 89  SQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMILVGKLVNSAVVQAQGTFNAQ 148
            + ++ ++I   + IP  F + +Y   QP V  + +  +    +   + V   Q    A 
Sbjct: 621 HRRLQRSEIKLALEIPPGFGRDLYAGRQPTVGAWLDGGIPFRAETSRNYV---QAVHQAN 677

Query: 149 VDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTNYAQFLVSAIVPALWQITIVVSTI 208
           ++ +  L+++      A  R      +    +NQ+       V+AI P +  + +     
Sbjct: 678 LEQLAELSSR------APNRQPGATLETRFRYNQDV----VSVNAIGPGVMALILAFIPA 727

Query: 209 LILAANY---RHYGLKSWLAQSPLTQLTRTL---LPYLPIFMLQGLGFLI----WFYDVL 258
           ++ A      +  G  +    +PLT+L   L   +PYL + ++  L  L     W + V 
Sbjct: 728 MLTALGIVREKELGSITNFYATPLTRLEFLLGKQVPYLAVSLIN-LALLTAMNRWLFGV- 785

Query: 259 RWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAFTA-PSFAFMGITFP 317
             P  G   TL +   + V+A   MG      T     A+      T+ P+  F G+  P
Sbjct: 786 --PFKGSGLTLAIGGLLYVLATTSMGLLISAFTRTQIAAILGTMIITSLPTIQFSGLIVP 843

Query: 318 ASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSLQPMVNMWGYLLPL-GLALLLIR 376
            S +   A     L P  +++++ V   +  L+        + + G+ L   GL+L++++
Sbjct: 844 RSSLEGAAAVMGQLFPAGYFLDIAVGTFTKALDLRQLWPQCLALGGFFLGFTGLSLIMLK 903

Query: 377 KHLA 380
           K  A
Sbjct: 904 KQEA 907