Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., ABC transporter, permease protein, putative (RefSeq) from Shewanella amazonensis SB2B

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 82/353 (23%), Positives = 145/353 (41%), Gaps = 37/353 (10%)

Query: 4   LKMKHAIPRQWTLLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLS 63
           L++   + ++   L  D+  F  +  +P++  +   +  +   AR LP G+VD S +   
Sbjct: 3   LRILAILTKELKQLSRDRMTFGMIVMIPLVQLMLFGYAINTD-ARHLPAGLVDMSGNSQG 61

Query: 64  RQLIREVDATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFY 123
           R L++ V AT  +   + + S+ +A +A+ +  +   +VIPA F   +    Q Q     
Sbjct: 62  RALVQAVSATQVVDFIESYQSIAQAEEAITAGHVKAALVIPADFGSRLISHPQAQTGQ-- 119

Query: 124 NSQMILVGKLVNSAVVQ--AQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRT---QITP 178
                  G   +  V Q    G+       +K+L  +T      +G  VP  T   ++  
Sbjct: 120 -------GAYFSRPVAQWLVDGSDTVVASTIKSL--RTMPLSEVLGLPVPESTATMEVVM 170

Query: 179 LFNQNTNYAQFLVSAIVPALWQITIVVSTILILAA---NYRHYGLKSWLAQSPLTQLTRT 235
            FN      Q  V  IVP L  + + ++ +L  +A     R  G   +L  +P+  L   
Sbjct: 171 YFNPE----QRTVVNIVPGLLGVILTMTMVLFTSAAIVREREQGNMEFLITTPVKPLELM 226

Query: 236 L---LPYLPIFMLQ-----GLGFLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFF 287
           L   LPY+ +  +Q     G G L++       P+ G   +L LA  + ++A + +G   
Sbjct: 227 LGKILPYVLVGFVQVAIILGAGKLLF-----ALPIRGGLESLALAAMLFILASLTLGLVI 281

Query: 288 YFLTLDPARAMSFAGAFTAPSFAFMGITFPASDMNTLAQAWRNLLPISHYIEV 340
             +     +AM        PS    G  FP   M   AQ     LP +H++ +
Sbjct: 282 STIARTQLQAMQMTVFILLPSILLSGFMFPYEAMPVPAQWIAEALPATHFMRM 334