Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  206 bits (525), Expect = 7e-58
 Identities = 130/374 (34%), Positives = 196/374 (52%), Gaps = 4/374 (1%)

Query: 6   MKHAIPRQWTLLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQ 65
           MK  + R+   L  + W  + ++++PIL  +++WW+FS  + R LP  +VD  +S LSR+
Sbjct: 1   MKTLLRRELGALWQNPWQLALVSYLPILAMLALWWLFSAALPRQLPVAMVDLDNSSLSRE 60

Query: 66  LIREVDATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNS 125
           L R + A S ++    FAS+ +A  AM   ++Y  +V+P  F + +    QP V   YN 
Sbjct: 61  LGRHI-AASPVISPISFASLPQAEDAMNRAEVYALVVVPHGFSRDLKTGAQPTVDVRYNG 119

Query: 126 QMILVGKLVNSAVVQAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTN 185
           Q +LVGKL+ + + QA       +   K LA   +   A +  + P+ TQ T LFN+N N
Sbjct: 120 QFLLVGKLLAANLQQAIADAMKPLAYSKQLAHGANPHQAHINIA-PIATQTTALFNRNNN 178

Query: 186 YAQFLVSAIVPALWQITIVVSTILILAANYRHYGLKSWLAQSPLTQLTRTLLPYLPIFML 245
           Y  FLV  ++ ALWQ+T ++  +   A N          +   L +L   LL Y+P+ ML
Sbjct: 179 YVGFLVPPVLIALWQLTAML--VFANALNRELEPSARCDSVGLLPRLGAKLLCYMPLLML 236

Query: 246 QGLGFLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAFT 305
           QGL      +  L+ P+      L+ A    ++A  ++ A  + L  + AR +SF  A  
Sbjct: 237 QGLFIHALLFGYLKLPVAASPLWLIPAMLALLLAVFLIVAVIFLLMQESARVVSFCTALF 296

Query: 306 APSFAFMGITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSLQPMVNMWGYL 365
           AP+FAFMG+TFP  DM   AQ WR L+P SHYI+  +  VSYG+  +  L        +L
Sbjct: 297 APAFAFMGVTFPVQDMPAAAQYWRLLMPSSHYIDSHIALVSYGVSGMELLGKSFTFMPFL 356

Query: 366 LPLGLALLLIRKHL 379
           L L    LL RK L
Sbjct: 357 LLLLPIALLARKGL 370