Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., ABC-2 transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score = 57.8 bits (138), Expect = 5e-13
 Identities = 67/333 (20%), Positives = 133/333 (39%), Gaps = 25/333 (7%)

Query: 17  LRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIREVDATSTL 76
           +R D+  F  +  VP+L  +   +  +    + L   +   S S  SR L   +  +   
Sbjct: 21  MRRDRLTFGMMLSVPMLQLILFGFAINTD-PKHLATVLNIQSPSAFSRDLTAAMSNSGYF 79

Query: 77  LVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMILVGKLVNS 136
            +    +S  E  + +   ++   + IP +F   + +  +P V             L+  
Sbjct: 80  DIIGEVSSEAEIDRLLDMGEVQFVLTIPPEFSSELQKGNRPVV-------------LMEV 126

Query: 137 AVVQAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRTQITPL-------FNQNTNYAQF 189
                  T NA + V+  LA +T      +G   P++    P+       +N   N    
Sbjct: 127 DATDPAATSNA-LHVIGQLA-RTAFDRHLVGPLAPLKVGEDPIDLRIHSRYNPEANSQYN 184

Query: 190 LVSAIVPALWQITIVVSTILILAANYRHYGLKSWLAQS--PLTQLTRTLLPYLPIFMLQG 247
           +V  ++  +  +T+V+ T L +        +++ L+    PL  +   +LPY+ +  +Q 
Sbjct: 185 VVPGLMGVILTMTMVMMTSLAITRERERDTMETLLSMPVRPLEVMIGKILPYIGLGYIQI 244

Query: 248 LGFLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAFTAP 307
           +  LI    +   P+ G    L L   + + A + +G  F  L+ +  +AM  +  +  P
Sbjct: 245 IVVLIAARLLFDVPVVGSLGLLALLLLLFIAANLAIGLTFSALSANQFQAMQMSFFYFLP 304

Query: 308 SFAFMGITFPASDMNTLAQAWRNLLPISHYIEV 340
           +    G  FP   M   AQ    +LP++H++ V
Sbjct: 305 ALLLSGFMFPFRGMPVWAQVLGEILPLTHFLRV 337