Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., ABC transporter permease from Rahnella sp. WP5

 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 98/368 (26%), Positives = 153/368 (41%), Gaps = 34/368 (9%)

Query: 27  LTWV-PILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIREVDATSTLLVSQHFASV 85
           L W+ P+LL   I   FS+G   DLP  VVD  HS LS+ LIR++DA S   V      +
Sbjct: 39  LCWIFPLLLFGLISSNFSEGTLLDLPVSVVDNDHSPLSKTLIRKLDAGSHAHVQAFEGGL 98

Query: 86  DEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMILVGKLVNSAVVQAQGTF 145
            EA   +R+ Q Y  + IP  F+  +   +QP    +YN            A+    G +
Sbjct: 99  PEAEYRLRTAQDYALLYIPNDFEADVLAGKQPSAVLYYN------------ALFYGAGLY 146

Query: 146 NAQ--VDVMKNLATKTHTTLAA-MGRSVP----VRTQITPLFNQNTNYAQFLVSAIVPAL 198
           + Q    ++  L T+  + +A  MG+++P    V      LFN + +Y  +   A    L
Sbjct: 147 STQDFSGLITELNTRYRSIIATEMGKTLPSLASVDVSYGSLFNASGSYIYYQQFAATIHL 206

Query: 199 WQITIVVSTILILAANYRHYGLKSWLAQSPLTQLTRTLLPYLPIF---MLQGLGFLIWFY 255
            Q+  V   I ++A   R   L S  A S    L   L PY   F   ++  +  L+ F+
Sbjct: 207 LQLFTVTCMIYVMA---RSQALLS--APSFTLALLGKLAPYTLCFTTLLMAEIAMLVGFF 261

Query: 256 DVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAFTAPSFAFMGIT 315
           D     + G+   +LL     V+A   +G   +  T     A +  G F + +  F G+ 
Sbjct: 262 DA---RVSGNPLYMLLIGFFYVIAAQSLGLLLFTFTKTTITAYTMMGIFVSIALTFSGMA 318

Query: 316 FPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSLQPMVNMWGYLLPLGLALLLI 375
            P   M   A+    + P+S+ +    +     +     L     +  Y L   L  LL+
Sbjct: 319 VPVLSMPLPARIISGIEPLSYALAAMFDVFLREVSVRGILMVCCILLVYPL---LTSLLV 375

Query: 376 RKHLAREM 383
           RK L   M
Sbjct: 376 RKRLYMRM 383