Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., ABC transporter permease from Rahnella sp. WP5

 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 56/307 (18%), Positives = 126/307 (41%), Gaps = 10/307 (3%)

Query: 29  WVPILLAVSIW-WIFSQGIARDLPFGVVDFSHSQLSRQLIREVDATSTLLVSQHFASVDE 87
           W+ +LL++ +   +++     DLP  V+D  HS  SR L R++DA S  + +  + ++ E
Sbjct: 27  WMMLLLSLCVMSLVYANRTVWDLPVAVIDQDHSTASRMLARQLDAGSK-IATVAYDNLAE 85

Query: 88  ASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMILVGKLVNSAVVQAQGTFNA 147
           A   +   +++  +++P   +K I   +   +  + ++   L    +   V+ A  +   
Sbjct: 86  AEHDLALRKLFAVIIMPVDLEKKILAGQNIVIPVYGDATNRLANGQIQQDVLAAYQSILT 145

Query: 148 QVDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTNYAQFLVSAIVPALWQITIVVST 207
           Q +    L+       A++  S P+  Q   +FN   ++A  +   ++  L Q ++++++
Sbjct: 146 QYNTDLLLSNGFSERQASVVLS-PILGQSLDVFNPGISFAAIIFPGLLVMLLQHSLLIAS 204

Query: 208 ILILAANYRHYGLKSWLAQSP-LTQLTRTLLPYLPIFMLQGLGFLIWFYDVLRWPMFGHF 266
           + +         L S  A  P +      +   +P+++   +   + +  VL +      
Sbjct: 205 VRVSIV------LNSGPAGKPSIPAFLGGISALIPVWLFLSIVLFVLWPWVLGYRQTATI 258

Query: 267 STLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAFTAPSFAFMGITFPASDMNTLAQ 326
             +LL     ++A + +G                    T P F   G  +P   M    +
Sbjct: 259 PEILLLTFPFLLAVLGLGKLVTECLRSVELIYLTLAFLTTPVFYISGTIWPLQAMPAWVR 318

Query: 327 AWRNLLP 333
           A  ++LP
Sbjct: 319 AISSMLP 325