Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., ABC-2 type transporter (RefSeq) from Shewanella loihica PV-4

 Score = 79.3 bits (194), Expect = 2e-19
 Identities = 75/361 (20%), Positives = 153/361 (42%), Gaps = 37/361 (10%)

Query: 5   KMKHAIPRQWTLLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSR 64
           ++K    ++   L+ D+  F  +  +P++  +   +  +  + R++P  VVD SHS   R
Sbjct: 8   RIKSITTKEIRQLKRDRITFGMVVMIPLIQLLLFGYAINTDV-RNVPVVVVDQSHSAAGR 66

Query: 65  QLIREVDATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYN 124
            ++  V  T  + + +H+AS +EA  A+   ++   +++P    + +   E         
Sbjct: 67  WIVEAVKVTQVVSIEKHYASAEEAEAAITRGEVRAALILPPNLTEKLANGET-------L 119

Query: 125 SQMILVGK--LVNSAVVQAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQ 182
            Q ++ G   +V SA+ Q +   N  +D +    T+   T            ++   +N 
Sbjct: 120 GQWVVDGSDTMVASAISQLR---NMPLDQITGQDTQRLPTF-----------EVALFYNP 165

Query: 183 NTNYAQFLVSAIVPALWQITIVVSTILILAANYRHYGLKSWLAQ--SPLTQLTRTLLPYL 240
               A  +V  ++  +  +T+++ T   +        L+  +     PL  +   ++PY+
Sbjct: 166 EQRSAVNIVPGLIAVILTMTMILFTSAAIVRERERGNLELLITTPIKPLELMLGKIVPYI 225

Query: 241 PIFMLQ-----GLGFLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPA 295
            + ++Q     GLG LI  +DV   P+ G  + LL+   + + A + +G     +     
Sbjct: 226 LVGLVQMTIILGLGHLI--FDV---PINGAIAQLLMGTLLFIAASLTLGLIISTIAKTQL 280

Query: 296 RAMSFAGAFTAPSFAFMGITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSL 355
           +AM        P+    G  FP   M   AQ    LLP +H++ + +  +     ALS +
Sbjct: 281 QAMQMTIFIILPTILLSGFMFPFEAMPKPAQWIAELLPATHFMRI-IRAIVLRGGALSDM 339

Query: 356 Q 356
           Q
Sbjct: 340 Q 340