Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., ABC-2 type transporter (RefSeq) from Shewanella loihica PV-4

 Score =  218 bits (555), Expect = 2e-61
 Identities = 127/380 (33%), Positives = 202/380 (53%), Gaps = 4/380 (1%)

Query: 6   MKHAIPRQWTLLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQ 65
           M   I R+   L    W  + ++++P+L  +++WW+FS G+ R LP  VVD   SQLSR 
Sbjct: 1   MGQLITRELRRLWQSPWQLALVSYLPLLGTLALWWLFSAGLPRALPVAVVDQDQSQLSRM 60

Query: 66  LIREVDATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNS 125
           L+R++ A S ++    +  + +A  AM   + Y  +V+P + ++ +    QP +   YN+
Sbjct: 61  LVRQLSANS-VISPVSYQDIGQAQAAMERAEAYAMVVLPFKLNQDLMIGHQPSIDIRYNA 119

Query: 126 QMILVGKLVNSAVVQAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTN 185
           Q +LVGKL++S +  +      Q   +K LA+      A +  ++ ++TQ + L+N N N
Sbjct: 120 QFLLVGKLLSSQIQLSLADGLKQKARLKQLASGVPPVQAEINLNL-IKTQSSALYNANNN 178

Query: 186 YAQFLVSAIVPALWQITIVVSTILILAANYRHYGLKSWLAQSPLTQLTRTLLPYLPIFML 245
           Y  FLV  I+ AL QI  ++     L    R   L  W +      L   +L Y P+ ML
Sbjct: 179 YVAFLVPPILIALVQIVAMLVFANALTEELRRETLAEWFSLGTYRVLLSKVLVYTPLLML 238

Query: 246 QGLGFLI-WFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAF 304
           Q LG +  W Y  L  PM G    LL+AQ + ++A  ++    + L  D AR +SF  A 
Sbjct: 239 Q-LGLVYAWLYGYLGLPMRGGLGQLLIAQLVMLLAVWLIVLTIFALLQDSARVISFCTAL 297

Query: 305 TAPSFAFMGITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSLQPMVNMWGY 364
            APSFAFMG+TFP  +M  LAQ WR ++P SHY+   +  ++YG E  + +  + + WG+
Sbjct: 298 FAPSFAFMGVTFPTHEMPLLAQWWRQIMPSSHYVNTHIGVIAYGQETQALVSQLSSYWGF 357

Query: 365 LLPLGLALLLIRKHLAREMG 384
           LL L +  L++ K    + G
Sbjct: 358 LLLLPVIALMLAKMRREQTG 377