Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., ABC-type multidrug transport system, permease component from Marinobacter adhaerens HP15

 Score = 88.2 bits (217), Expect = 4e-22
 Identities = 95/384 (24%), Positives = 161/384 (41%), Gaps = 42/384 (10%)

Query: 17  LRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIREVDATSTL 76
           LR D+  F  +  +P+L  +   +  +  I R +P G+VDFS S LSR++++ V AT  +
Sbjct: 18  LRRDRMTFGMIVMIPLLQLLLFGYAINTNI-RHIPVGIVDFSQSGLSREIVQIVKATQVV 76

Query: 77  LVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQE-----QPQVTTFYNSQMILVG 131
            +  +F SV++A  A+ S ++   ++IP   D  + R +      P  T    SQ I   
Sbjct: 77  EIRSYFESVEKAQAAIASAEVRAVLIIPEDVDNRLARHQSLGFGSPPATDEETSQPI--- 133

Query: 132 KLVNSAVVQAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTNY--AQF 189
                A   A G+       +K+L       L  + R V    ++TP F     Y   Q 
Sbjct: 134 -----AQWIADGSDTIIASAIKSLRGMPLAEL--LDRPV---NRVTPTFEVTLLYNPEQR 183

Query: 190 LVSAIVPALWQITIVVSTILILAA---NYRHYGLKSWLAQS---PLTQLTRTLLPYLPIF 243
            V  IVP L  I + ++ I+  +A     R  G    L  +   P+  +   ++PY+ I 
Sbjct: 184 TVVNIVPGLVAIILTMTMIMFTSAAIVRERERGNMEMLISTPVRPIELMIGKIIPYIFIG 243

Query: 244 MLQ-----GLGFLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAM 298
           ++Q     GLG +++       P+ G  + L     + + A + +G     +  +  ++M
Sbjct: 244 VIQVSIILGLGRVLFHV-----PVEGGLAQLAGVTFLFITASLTLGLVISTIARNQLQSM 298

Query: 299 SFAGAFTAPSFAFMGITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSLQPM 358
                   PS    G  FP   M   AQ     LP +H++ +    V   +E  +    +
Sbjct: 299 QMTVFVLMPSILLSGFVFPYEGMPVAAQYIAEALPATHFMHLVRGVVLRDVEVTNMASDV 358

Query: 359 VNMWGYLLPLG---LALLLIRKHL 379
              W  L  LG   +A L  +K L
Sbjct: 359 --YWLALFTLGGLLVASLRFKKRL 380