Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  231 bits (589), Expect = 3e-65
 Identities = 138/382 (36%), Positives = 206/382 (53%), Gaps = 8/382 (2%)

Query: 10  IPRQWTLLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIRE 69
           + R+   L  D W  + ++++P+L  + +WW+FS G+ R LP  +VD  HSQLSR L R+
Sbjct: 39  VRRELRALWRDPWQLALISYIPLLGILCLWWLFSAGLPRQLPVAIVDLDHSQLSRMLTRQ 98

Query: 70  VDATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMIL 129
           + A + +   Q F  +  A  AM+  Q+Y  +V P    K +     P +   YNSQ +L
Sbjct: 99  LKA-NPVTDPQSFTDLSSAITAMQQAQVYAVVVFPYDMKKDLLTGHTPTIDVRYNSQFLL 157

Query: 130 VGKLVNSAVVQAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTNYAQF 189
           VGKL++S +  + G    QV  +K L T T  +  A+  S PV++Q T LFN+N NY  F
Sbjct: 158 VGKLLSSQIQMSLGDGLLQVAGLKQLMTGTPKSQVAVNLS-PVKSQTTALFNRNNNYIGF 216

Query: 190 LVSAIVPALWQIT---IVVSTI---LILAANYRHYGLKSWLAQSPLTQLTRTLLPYLPIF 243
           LV  ++ ALWQ+    ++ +++   L L A     G+ + L +    ++   +L + PI 
Sbjct: 217 LVPPVLVALWQLLSMLVIANSLNRELHLNAAQSVGGISNRLTEHFWPKVLAKILLFTPIL 276

Query: 244 MLQGLGFLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGA 303
           MLQG   L W Y  L  P+ G  + LL AQ I ++A   +    + L  D AR +SF  A
Sbjct: 277 MLQGGFILTWLYQYLALPLAGSLALLLFAQLIMLLAVWSLVLLVFVLMRDSARVISFCTA 336

Query: 304 FTAPSFAFMGITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSLQPMVNMWG 363
             AP+FAFMGITFP  +M  LAQ WR ++P SHYIE  V+ VSYG    +  Q + + WG
Sbjct: 337 LFAPAFAFMGITFPTHEMPQLAQWWRLVMPSSHYIESHVSVVSYGAAWPTVAQQLSSYWG 396

Query: 364 YLLPLGLALLLIRKHLAREMGA 385
           ++    +   L  K L   + A
Sbjct: 397 FICLFPVIYALANKLLPMTVNA 418