Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.9 bits (180), Expect = 7e-18
 Identities = 78/329 (23%), Positives = 139/329 (42%), Gaps = 12/329 (3%)

Query: 54  VVDFSHSQLSRQLIREVDATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYR 113
           VVD  HS LSRQLIR  DA++ + V     S+ EA + + + + +G +VIP  F + +  
Sbjct: 51  VVDLDHSSLSRQLIRHADASAKIQVIGQVGSITEAKRFIETGKAHGLLVIPEGFRRDLLL 110

Query: 114 QEQPQVTTFYNSQMILVGKLVNSAVVQAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVR 173
            +   ++   ++   L+   V   +V A      Q+  +  LA   +   A    +  + 
Sbjct: 111 GKGVTLSYGGDASYFLIYSAVAEGLVSAGMDAGKQIQWIGMLAQGKNPKEAEQNLN-SLH 169

Query: 174 TQITPLFNQNTNYAQFLVSAIVPALWQITIVVSTILILAANYRHYGLKSWLAQSPLTQLT 233
               P FN +  Y  ++V  +   +   T+++ T ++ A  +RH G   W   SPL  + 
Sbjct: 170 LNSMPAFNPSLGYTPYVVPGLFLLILHQTLLIGTGILGAGQWRHQGY--WQQVSPLQLVC 227

Query: 234 RTLLPYLPIFMLQG---LGFLIWFYDVLRWPMFGHFSTLLLAQSI-TVVACVIMGAFFYF 289
             +L ++ I++L     +G+   +Y+V     FG  +  LL   + T  A V M   F  
Sbjct: 228 GRILAFMLIYLLFTSFYVGYCYHWYNVSIQANFGLVALWLLPFLLATAAAGVAMSTLFTR 287

Query: 290 LTLDPARAMSFAGAFTAPSFAFMGITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGL 349
             L P + +      + P     G  +P + +         ++P    I   +     G 
Sbjct: 288 RDL-PTQVLLL---ISMPILFVSGFVWPIALIPEPLVLGSQMIPAVPAIMGMLELNQMGA 343

Query: 350 EALSSLQPMVNMWG-YLLPLGLALLLIRK 377
              S L   + +W  + +  GLALL I +
Sbjct: 344 SWASVLPKWLQLWVLFAVFFGLALLGIHR 372