Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., ABC transporter, permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 64.7 bits (156), Expect = 4e-15
 Identities = 71/331 (21%), Positives = 135/331 (40%), Gaps = 21/331 (6%)

Query: 17  LRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIREVDATSTL 76
           L  D+  F  +  +P++  +   +  +   AR LP G+V+ S S  SR L++ V+AT  +
Sbjct: 16  LSRDRMTFGMIVMIPLVQLMLFGYAINTD-ARHLPAGLVNLSDSSYSRALVKAVEATQVV 74

Query: 77  LVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMILVGK-LVN 135
              + ++S  +A  A+   ++   + + A  D+ + R        ++      VG+ LV+
Sbjct: 75  DFKRSYSSAAQAEAAITRGEVKAVLYLGADLDERLVRHPAFAGQAYFAEP---VGQWLVD 131

Query: 136 SAVVQAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTNYAQFLVSAIV 195
            +      T  +   +   L   T  TL    +S P   ++   FN      Q  V  IV
Sbjct: 132 GSDTVVASTIRSLRQM--PLDEITGRTL----KSNPPSFEVVQYFNPE----QRSVVNIV 181

Query: 196 PALWQITIVVSTILILAA---NYRHYGLKSWLAQSPLTQLTRTL---LPYLPIFMLQGLG 249
           P L  + + ++ ++  +A     R  G   +L  +P+  L   L    PY+ +  +Q   
Sbjct: 182 PGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVLVGFVQVTI 241

Query: 250 FLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAFTAPSF 309
            L   + +   P+ G   ++  A  + + A + +G     +     ++M        PS 
Sbjct: 242 ILSAGHLLFDVPIRGGIDSIAFAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPSI 301

Query: 310 AFMGITFPASDMNTLAQAWRNLLPISHYIEV 340
              G  FP   M   AQ     LP +H++ +
Sbjct: 302 LLSGFMFPYEAMPVAAQWIAEALPATHFMRM 332