Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  137 bits (344), Expect = 7e-37
 Identities = 90/336 (26%), Positives = 150/336 (44%), Gaps = 5/336 (1%)

Query: 16  LLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIREVDATST 75
           L+    +LF C+   P+   +    +   G+ ++LP GVVD   S  SR ++R +DA S 
Sbjct: 22  LVSRPLYLF-CMVIAPLFCYLFFTTLMDSGLPQNLPAGVVDMDDSSTSRNIVRNLDAFSQ 80

Query: 76  LLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMILVGKLVN 135
             V  H+++V +A  A++  +IYGF  IP         Q QP+++ + N   ++ G L+ 
Sbjct: 81  TGVVAHYSNVTDARIAVQEGKIYGFFYIPKGLSAEAQSQRQPKISFYTNYSYLIAGSLL- 139

Query: 136 SAVVQAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTNYAQFLVSAIV 195
              ++  G   A       L  K  T   AMG   P+     PL N   NY+ +L + ++
Sbjct: 140 FRDMKMMGELTAGSAARSVLYAKGATEDQAMGFLQPIVIDTHPLNNPWLNYSVYLCNTLI 199

Query: 196 PALWQITIVVSTILILAANYRHYGLKSWLAQSP---LTQLTRTLLPYLPIFMLQGLGFLI 252
           P +  + I + T+  +    +    + WL  S       L   LLP+  +F + G+ + +
Sbjct: 200 PGVLMLLIFMVTVYSIGVEIKDRTAREWLRMSNNSIYIALAGKLLPHTVVFFIMGIFYNV 259

Query: 253 WFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAFTAPSFAFM 312
           + Y  L +P       ++ A    V+A    G             +SFA  +   SF+  
Sbjct: 260 YLYGFLHFPCNSGIFPMIFATLCLVLASQCCGIVMIGTLPTLRLGLSFASLWGVISFSIS 319

Query: 313 GITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYG 348
           G +FP   MN + QA  NL P+ HY  + V+Q   G
Sbjct: 320 GFSFPVMAMNPVLQALSNLFPLRHYFLIYVDQALNG 355