Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 68.2 bits (165), Expect = 4e-16
 Identities = 63/307 (20%), Positives = 126/307 (41%), Gaps = 19/307 (6%)

Query: 40  WIFSQGIARDLPFGVVDFSHSQLSRQLIREVDATSTLLVSQHFASVDEASQAMRSNQIYG 99
           ++++  I  D+P  VVD SHS+LSR  IR +DAT    +        EA + M++ ++ G
Sbjct: 44  YMYAPNIVTDVPVAVVDNSHSELSRNFIRWLDATPQAEIYDQAMDYHEAKEWMKAGKVQG 103

Query: 100 FMVIPAQFDKAIYRQEQPQVTTFYNSQMILVGKLVNSAVVQAQGTFNAQVDVMKNLATKT 159
            + +P  F++ ++R ++   + +  +   L  + +  A  +     N +           
Sbjct: 104 ILYLPHDFEERVFRGDEAVFSLYATTDAFLYFEALQGASSRVMLAINDKYR-PDGAVFLP 162

Query: 160 HTTLAAMGRSVPVRTQITPLFNQNTNYAQFLVSAIVPALWQITIVVSTILILAANYRHYG 219
              L A+  + PV    T L+N    Y  +L+ A++  +   T+++   ++    +   G
Sbjct: 163 PQGLLAVAMAQPVNIAGTALYNYTEGYGSYLIPAVMVIIIFQTLLMVIGMVTGEEHMTKG 222

Query: 220 L-------KSW-LAQSPLTQLTRTLLPYLPIFMLQGLGFLIWFYDVLRWPMFGHFSTLLL 271
           +       KSW +A   ++  T        +F    LG L  F+ +   P  G+   ++L
Sbjct: 223 ILAYTPFGKSWAVAIRIVSGKTFVYCSLYAVFSFFLLGLLPHFFSI---PNIGNGLYIVL 279

Query: 272 AQSITVVACVIMGAFFYFLTLDPARAMSFAGAFTAPSFAFMGITFPASDMNTLAQAWRNL 331
                ++A   +G        D    +     F+       G+++P   M  +   W+  
Sbjct: 280 MMIPYLLATSFLGLAASRYFTDSEAPLLMIAFFSVGLIFLSGVSYP---MELMPWYWK-- 334

Query: 332 LPISHYI 338
              +HYI
Sbjct: 335 --AAHYI 339