Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., conserved hypothetical protein, putative transmembrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  113 bits (282), Expect = 1e-29
 Identities = 91/378 (24%), Positives = 172/378 (45%), Gaps = 18/378 (4%)

Query: 12  RQWTLLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIREVD 71
           R+W  +   +        +P+     +  IF  G   ++P G+VD  ++  SR + R + 
Sbjct: 16  REWRRMTSRRLYLCVCIILPLFTLFFMATIFGNGQMENIPIGIVDQDNTASSRAITRNIS 75

Query: 72  ATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMILVG 131
           A  T  V++HF + + A +A++  +IYG++ IP +F++     +   ++ +Y+  ++ VG
Sbjct: 76  AVPTFKVTRHFVNEEAARKAVQKKEIYGYLSIPPKFEQDAISGKNATLSYYYHYALLSVG 135

Query: 132 KLVNSAVVQAQGTFNAQVDVMKNLA-----TKTHTTLAAMGRSVPVRTQITPLFNQNTNY 186
             + +A   +    +    VM+ +A      K  T L      +PV+    P++N + +Y
Sbjct: 136 GELMAAFETSLAPVSLSPIVMQAVALGVEQDKITTFL------LPVQASNHPIYNPSLDY 189

Query: 187 AQFLVSAIVPALWQITIVVSTILILAANYRHYGLKSWL---AQSPLTQLTRTLLPYLPIF 243
           + +L       L+Q+ I++ T+  +    +      WL     + +T +   LLPY  IF
Sbjct: 190 SVYLSQPFFFVLFQVLILLITVYAVGIEIKFRTADEWLFVAKGNMVTAVLGKLLPYTIIF 249

Query: 244 MLQGLGFLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGA 303
           +L G       + +L  P  G +  + +  ++ VVA   +G F + L    +  +S    
Sbjct: 250 ILIGWLANYVMFGILHIPFQGSWLLMNMLTALFVVATQALGLFLFSLFPAISLIISIVSM 309

Query: 304 FTAPSFAFMGITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSLQPMVNMWG 363
             +      G+TFP  +M  L +    L P+ H+ E+  N + YG      L P   +  
Sbjct: 310 VGSLGATLSGVTFPVPNMYPLVRDASYLFPVRHFTEMMQNML-YGGSGFIHLWPSAVIL- 367

Query: 364 YLLPLGLALLLIRKHLAR 381
            + PL LAL+L+  HL R
Sbjct: 368 CIFPL-LALVLL-PHLKR 383