Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., putative ABC transporter permease protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 56.2 bits (134), Expect = 1e-12
 Identities = 66/344 (19%), Positives = 143/344 (41%), Gaps = 25/344 (7%)

Query: 6   MKHAIPRQWTLLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQ 65
           +K  I +++  L  + +L   +   P ++ + + W  +  I +++   +VD  HS +S++
Sbjct: 2   IKFLIEKEFKQLLRNSFLPRLILIFPCMIMLLMPWAVNLEI-KNIQLNIVDNDHSVISQR 60

Query: 66  LIREVDATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNS 125
           L+ ++ A++   +++  AS ++  + +        M IP   ++    + +  +    NS
Sbjct: 61  LVNKIAASTYFRLTEVPASYEDGLRNIEQGTADIIMEIPRHLERDWVNKGEAHILIAANS 120

Query: 126 QMILVGKLVNSAVVQAQGTFNAQVDVMKNLATKTHT----TLAAMGRSVPVRTQITPLFN 181
                G L +S +    GT      ++KN A +        ++A G +  +R     LFN
Sbjct: 121 VNGTKGGLGSSYL----GT------IIKNYAAELRAEYPDAISASGSAPSIRIDTQGLFN 170

Query: 182 QNTNYAQFLVSAIVPALWQITIVVSTILIL-AANYRHYGLKSWLAQSPLTQLTRTLLPYL 240
            N NY  +++ A++  L  +T++   +  L   + +  G    +  +P+ + T  L   L
Sbjct: 171 PNLNYKLYMIPALMGML--LTLICGFLPALNVVSEKEVGTIEQINVTPVPKFTFILAKLL 228

Query: 241 PIFMLQGLGFLIWFYDVLRWPMF-----GHFSTLLLAQSITVVACVIMGAFFYFLTLDPA 295
           P ++   +   + F  +L W ++     GHF  +     + V      G      +    
Sbjct: 229 PYWITGFIVLTLCF--LLAWLLYGITPVGHFIVIYFLAILFVFVMSGFGLVISNYSATMQ 286

Query: 296 RAMSFAGAFTAPSFAFMGITFPASDMNTLAQAWRNLLPISHYIE 339
           ++M     F        G+  P S M   AQ      P+ +++E
Sbjct: 287 QSMFVMFFFMLILMLMSGLFTPVSSMPEWAQVITYFNPLKYFME 330