Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., ABC-2 type transporter (RefSeq) from Shewanella sp. ANA-3

 Score =  232 bits (592), Expect = 1e-65
 Identities = 140/376 (37%), Positives = 206/376 (54%), Gaps = 8/376 (2%)

Query: 10  IPRQWTLLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIRE 69
           + R+   L  D W  + ++++P+L  + +WW+FS G+ R LP  +VD  HSQLSR L R+
Sbjct: 35  VRRELRALWRDPWQLALISYIPLLGILCLWWLFSAGLPRQLPVAIVDQDHSQLSRMLTRQ 94

Query: 70  VDATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMIL 129
           + A + +   + F  +  A  AM+  Q+Y  +V P    K +    +P +   YNSQ +L
Sbjct: 95  LKA-NPVTEPRSFTDLPSAVAAMQQAQVYAVVVFPHDMKKDLLTGHKPTIDVRYNSQFLL 153

Query: 130 VGKLVNSAVVQAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTNYAQF 189
           VGKL++S +  + G    QV  +K L T T  +  A+  S PV++Q T LFN+N NY  F
Sbjct: 154 VGKLLSSQIQLSLGDGLLQVAGLKQLMTGTPKSQVAVNLS-PVKSQTTALFNRNNNYIGF 212

Query: 190 LVSAIVPALWQITIVV------STILILAANYRHYGLKSWLAQSPLTQLTRTLLPYLPIF 243
           LV  ++ ALWQ+  ++      +  L L A     G+ + L +    ++   +L + PI 
Sbjct: 213 LVPPVLVALWQLLSMLVMANSLNRELHLNAAQSEEGISNRLTEHFWPKVLAKILLFTPIL 272

Query: 244 MLQGLGFLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGA 303
           MLQG   L W Y  L  P  G  + LL+AQ I ++A   +  F + L  D AR +SF  A
Sbjct: 273 MLQGGFILAWLYLYLALPFAGSLALLLVAQLIMLLAVWSLVLFIFVLMRDSARVISFCTA 332

Query: 304 FTAPSFAFMGITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSLQPMVNMWG 363
             AP+FAFMGITFP  +M  LAQ WR ++P SHYIE  V+ VSYG    +  Q + + WG
Sbjct: 333 LFAPAFAFMGITFPTHEMPQLAQWWRLIMPSSHYIESHVSVVSYGATWSTLAQQLSSYWG 392

Query: 364 YLLPLGLALLLIRKHL 379
           ++  L L  LL  K L
Sbjct: 393 FIGLLPLIYLLAIKLL 408