Pairwise Alignments

Query, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., ABC-2 type transporter (RefSeq) from Shewanella sp. ANA-3

 Score = 67.4 bits (163), Expect = 6e-16
 Identities = 69/331 (20%), Positives = 132/331 (39%), Gaps = 21/331 (6%)

Query: 17  LRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIREVDATSTL 76
           L  D+  F  +  +P++  +   +  +   AR LP G+V+ S S  SR L++ V+AT  +
Sbjct: 16  LSRDRMTFGMIVMIPLVQLMLFGYAINTD-ARHLPAGLVNLSDSAYSRALVKAVEATQVV 74

Query: 77  LVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMILVGKLVNS 136
                + S  EA  A+   ++   + + A  D+ + R        ++      VG+ +  
Sbjct: 75  DFKHRYLSAAEADAAITRGEVKAVLYLGADLDERLVRHPAFAGQAYFAEP---VGQWL-- 129

Query: 137 AVVQAQGTFNAQVDVMKNLATKTHTTLAAMG-RSVPVRTQITPLFNQNTNYAQFLVSAIV 195
                 G+       +++L       +A    +S P   ++   FN      Q  V  IV
Sbjct: 130 ----VDGSDTVVASTIRSLRQMPLDEIAGRAVKSNPPSFEVVQYFNPE----QRSVVNIV 181

Query: 196 PALWQITIVVSTILILAA---NYRHYGLKSWLAQSPLTQLTRTL---LPYLPIFMLQGLG 249
           P L  + + ++ ++  +A     R  G   +L  +P+  L   L    PY+ +  +Q   
Sbjct: 182 PGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVLVGFVQLAI 241

Query: 250 FLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAFTAPSF 309
            L   + +   P+ G   ++ LA  + + A + +G     +     ++M        PS 
Sbjct: 242 ILSAGHLLFAVPIRGGLDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPSI 301

Query: 310 AFMGITFPASDMNTLAQAWRNLLPISHYIEV 340
              G  FP   M   AQ     LP +H++ +
Sbjct: 302 LLSGFMFPYEAMPVAAQWIAEALPATHFMRM 332