Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., transporter from Pseudomonas fluorescens FW300-N2E3

 Score = 67.8 bits (164), Expect = 4e-16
 Identities = 80/321 (24%), Positives = 138/321 (42%), Gaps = 32/321 (9%)

Query: 23  RFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAK 82
           RFY++   +   +QG+I      +SS++  RI++VLV+    VEKGQL+  L   +    
Sbjct: 32  RFYES--TDNAYVQGEITR----VSSQLGARIEEVLVQDNQHVEKGQLLIKLEGDDFHLA 85

Query: 83  LEQAIAGQKAAGALAQEAENGAREQQ--IQAAKDQWLKAQAAAELAEKTYLRVNNLYNDG 140
           +++A A      A   +A++   +Q   I A++ Q   +QA    ++    R   L   G
Sbjct: 86  VDRANATLATREAERLQAQSKLTQQASLIAASEAQVAASQATLGRSQIDLSRAQTLRKPG 145

Query: 141 VVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEKARM------AAGAV 194
            VSE++        + A+   + A    Q   +G R++      E  R+      A   +
Sbjct: 146 YVSEERVTTLSADNRIARSQVAKA----QADAQGQRQQVNALTAEIKRLDAQIANAKADL 201

Query: 195 AEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNVREDLLKHF 254
           A+       ++I +   G + Q    +G+    G  ++++V  QD W   N +E  + H 
Sbjct: 202 AQARLNLTRSEIHAPISGLIGQRAARNGQYVQAGAYLLSIVPDQDIWIQANFKETQIGHM 261

Query: 255 TQGAQFTAYLPALNKS-IEFKVTHV--AVMGDFATWRSTDATQGFDLRTFEVEARPV--- 308
             G +      A + + IE +V  +  A    F+     +AT  F   T  V+  PV   
Sbjct: 262 QPGQKAELTFDAYSDTPIEARVDSLFAASGAQFSLLPPDNATGNF---TKVVQRIPVKLT 318

Query: 309 ----TPTEG-LRMGMSVVVKL 324
                P  G +R GMSV VK+
Sbjct: 319 FAADNPLHGKIRPGMSVTVKV 339