Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family from Pseudomonas fluorescens FW300-N1B4

 Score = 49.7 bits (117), Expect = 1e-10
 Identities = 56/239 (23%), Positives = 88/239 (36%), Gaps = 51/239 (21%)

Query: 40  ESQQYSISSKVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQE 99
           E +   +  +VPG ++ V V  G  V+KGQL+  + S                       
Sbjct: 95  EDRTAHVVPRVPGVVESVSVNLGQSVKKGQLLAVIAS----------------------- 131

Query: 100 AENGAREQQIQAAKDQWLKAQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKY 159
                  QQI   + +   AQ    LA  TY R   L+ D + +EQ    A+        
Sbjct: 132 -------QQISDQRSEQAAAQRRLTLARTTYEREKKLWQDKISAEQDFLLARQ------- 177

Query: 160 TESAALQMYQLAKEGAREETKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLM 219
               AL+  ++A   AR+        K  + +G+V  V       ++++ FDG V +  +
Sbjct: 178 ----ALEEAEIALANARQ--------KISVLSGSV--VATGGNRYELRAPFDGVVVEKHL 223

Query: 220 HSGELAPQGFPVVTVVDTQDTWAVFNVREDLLKHFTQGAQFTAYLPALNKSIEFKVTHV 278
             GE+  +     T+ D    W  F V    L     G   T   P LN  +   V +V
Sbjct: 224 TPGEVVDETTNAFTLSDLSRVWVTFGVSPKDLTKVQVGKPVTVSAPELNAEVAGTVAYV 282