Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., multidrug resistance efflux pump from Xanthomonas campestris pv. campestris strain 8004

 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 85/303 (28%), Positives = 129/303 (42%), Gaps = 13/303 (4%)

Query: 34  TLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAA 93
           T    +  Q   I+ +V G + QV V+    V +GQL+  +        LEQA A  +  
Sbjct: 55  TENAMVHGQVTVIAPQVSGYVTQVPVQDFAHVRRGQLLAKIDDRIYAQHLEQAKAQLQTT 114

Query: 94  GA-LAQ-EAENGAREQQIQAAKDQWLKAQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQ 151
            A LA  E +  + E  I   +      QA  +     Y R   L N  +VSEQ RD A 
Sbjct: 115 QANLANWEQQRHSAEATIAEQRATLSSNQAQRDRTRSAYARAQQLANQKLVSEQDRDTAF 174

Query: 152 TQWQAAKYTESAALQMYQLAKEGAREET-KQAALEKARMAAGAVAEVEAYAAD-TKIQSW 209
                A    + A    Q A+E AR  T  +AALE A   A A  ++     D T+I + 
Sbjct: 175 AARAQADAGVAQARAAVQAAEENARSVTVNRAALEAAVANAQAAVQLAQINLDNTRILAP 234

Query: 210 FDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNVREDLLKHFTQGAQFTAYLPAL-N 268
            DG++ Q+ +  G     G  ++ +V     W V N +E  + +   G + +  + AL N
Sbjct: 235 RDGQLGQLGVRQGAYVTNGTQLMALV-PDTLWVVANFKETQMANVRVGQRASFTVDALAN 293

Query: 269 KSIEFKVTHV--AVMGDFATWRSTDATQGF----DLRTFEVEARPVTPTEG-LRMGMSVV 321
             ++ +V  +  A   +F+  R+ +AT  F          +   P  P    LR GMSVV
Sbjct: 294 ARLQGRVQEISPAAGSEFSVLRADNATGNFVKIAQRIPLRISVDPGQPQAARLRPGMSVV 353

Query: 322 VKL 324
           V +
Sbjct: 354 VAI 356