Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., multidrug resistance efflux pump (RefSeq) from Shewanella amazonensis SB2B

 Score = 84.0 bits (206), Expect = 5e-21
 Identities = 78/261 (29%), Positives = 125/261 (47%), Gaps = 10/261 (3%)

Query: 8   LMTLTAVAVVGWIGYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEK 67
           + T   V V+G   Y  + A +  P+T Q  + +    I+ +V G I QV V    +VE 
Sbjct: 11  ISTYLFVTVLGIWLYSLW-ADRVTPMTTQAFVHAYLVRITPEVAGNIVQVNVDNDKRVEA 69

Query: 68  GQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAEN-GAREQQIQAAKDQWLKAQAAAELA 126
           G+L+F     EIDA   Q IA +KA   L +  ++ GA    +Q A+ +   A+AA + A
Sbjct: 70  GELLF-----EIDATQYQ-IAREKAQADLERVGQSLGASTAAVQVAQAKVGDARAALDNA 123

Query: 127 EKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEK 186
           +    RV  L   GV+S+ + D A+   Q A+ +  AA      AK+      +     K
Sbjct: 124 KAQATRVETLAERGVLSQAELDNAREAAQRAQASLEAAQASLLQAKQNLGPVGENNPELK 183

Query: 187 ARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNV 246
           A MAA A AE++     T++ +   G V+ V +  G+    G P +T +D ++ W    +
Sbjct: 184 AAMAALAKAELDLKR--TRVVAPSRGVVTNVQLSPGQYMAPGQPALTFIDPREVWISAMM 241

Query: 247 REDLLKHFTQGAQFTAYLPAL 267
           RE+ L+H  +G +      AL
Sbjct: 242 RENSLEHIREGGKVGLVFDAL 262