Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  355 bits (912), Expect = e-103
 Identities = 184/319 (57%), Positives = 235/319 (73%)

Query: 3   TVKTTLMTLTAVAVVGWIGYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKG 62
           TV   L T   VA+V  +G+    A+ P    LQGQIE+++Y +SSKVPGRI+QV+VR G
Sbjct: 2   TVNRLLATSALVALVIALGWGLMLAHTPAKAPLQGQIEAREYHVSSKVPGRIEQVMVRTG 61

Query: 63  DQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAA 122
           D V  G L++ + SPE++AKL QA  G+ AA A+  EA+ GAR+QQI A K+QWLKA+A 
Sbjct: 62  DTVAAGDLLYVIDSPELNAKLMQAEGGRDAARAMQLEADTGARKQQIAAQKEQWLKAKAG 121

Query: 123 AELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQA 182
            ELA+ T+ RV+NL+N+GVV  QKRDEA TQWQAA+YTE AAL +YQ+ +EGAREETK A
Sbjct: 122 LELAKTTFERVDNLFNEGVVPRQKRDEAYTQWQAARYTEQAALAVYQMTEEGAREETKAA 181

Query: 183 ALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWA 242
           A   ARMA GAV EV A  AD+++++   GEVS+VL+ SGELAP GFPVV++VD  D WA
Sbjct: 182 AAGNARMAEGAVKEVSAILADSQMRAPRGGEVSEVLLQSGELAPSGFPVVSLVDMNDAWA 241

Query: 243 VFNVREDLLKHFTQGAQFTAYLPALNKSIEFKVTHVAVMGDFATWRSTDATQGFDLRTFE 302
           VF +RED+LK   +G     Y+PAL+ S  FKV+H+AVMGDFATWRST++   FDLRTF+
Sbjct: 242 VFQLREDMLKDVKKGELKQLYIPALDISAGFKVSHIAVMGDFATWRSTESGHDFDLRTFK 301

Query: 303 VEARPVTPTEGLRMGMSVV 321
           VE  P  P EGLR+GMS +
Sbjct: 302 VELVPQHPIEGLRVGMSAI 320