Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., secretion protein HlyD from Rahnella sp. WP5

 Score = 82.8 bits (203), Expect = 1e-20
 Identities = 76/319 (23%), Positives = 139/319 (43%), Gaps = 8/319 (2%)

Query: 8   LMTLTAVAVVGWIGYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEK 67
           ++ + A+ V  + G+ +YQ+ Q +P+TL G ++ +  ++S +V GR+  + V +GD ++ 
Sbjct: 9   VLVVIALLVSCFGGWMWYQSEQEKPLTLYGNVDIRTVNMSFRVGGRLATLQVDEGDSIKA 68

Query: 68  GQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAELAE 127
           G+ +  L        L+QA A   A  A       G R+++I     Q  +AQAA + A+
Sbjct: 69  GETLGELDKGPYQNALQQAEANVAATQAKFDLIIAGYRDEEIAQVAAQVNQAQAAYDYAQ 128

Query: 128 KTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEKA 187
             Y R   L+   +++  + + +++    AK T  AA       + G R +    A    
Sbjct: 129 NFYQRQQGLWARRMIAANELENSRSSSDQAKATLKAARDKLSQYRNGNRPQEIAQAQASL 188

Query: 188 RMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNVR 247
           + A   +++ +    DT + +   G +    +  G +   G  V+T+  T+  W    V 
Sbjct: 189 QQAKAQLSQAQLDLQDTTLTAPSAGTLLTRAVEPGSMLNAGNTVLTLSLTRPVWVRAYVN 248

Query: 248 EDLLKHFTQGAQFTAYLPAL-NKSIEFKVTHVAVMGDFATWRSTDATQGFDLRTFEVEAR 306
           E  L +   G +   Y      K    K+  V+   +F    +    +  DLRT  V   
Sbjct: 249 EVSLYNVQPGTEVQIYTDGRPEKPYHGKIGFVSPTAEF----TPKTVETPDLRTDLVYRL 304

Query: 307 PVTPT---EGLRMGMSVVV 322
            +  T   + LR GM V V
Sbjct: 305 RIIVTDADDSLRQGMPVTV 323