Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., efflux RND transporter periplasmic adaptor subunit from Parabacteroides merdae CL09T00C40

 Score =  231 bits (588), Expect = 2e-65
 Identities = 129/318 (40%), Positives = 187/318 (58%), Gaps = 4/318 (1%)

Query: 8   LMTLTAVAVVGWIGYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEK 67
           ++ L AV ++ ++G    +    +PV LQGQIE+ +  IS K+PGRID  LV +G  V+ 
Sbjct: 13  IVVLIAVIILSFVGMFLLK---DKPVILQGQIEATEIRISGKLPGRIDTFLVEEGQNVKA 69

Query: 68  GQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAELAE 127
           G  +  + SPE  AK +Q  A +  A    Q+ + G R+Q I   +  W K+++  ELA+
Sbjct: 70  GDTLVVINSPEALAKYQQVNALESIARFQNQKVDEGTRKQIIATVQQLWNKSKSDLELAK 129

Query: 128 KTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEKA 187
            TY R+  LY D VVS Q+RDE +  + AA   E AA   YQ+A +GA+ + +++A    
Sbjct: 130 TTYNRIEVLYRDSVVSSQRRDEVKALYDAAVAGERAAWNQYQMALDGAQIQDRESARSLV 189

Query: 188 RMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNVR 247
             A G V EV A   D ++ +   G++S +    GEL   G P++ ++   D   V NVR
Sbjct: 190 NAAKGTVEEVAALLQDARLTAPESGQISTIFPKRGELVGAGMPIMNLIVLDDVHIVLNVR 249

Query: 248 EDLLKHFTQGAQFTAYLPALN-KSIEFKVTHVAVMGDFATWRSTDATQGFDLRTFEVEAR 306
           ED L  F  G  F A +PA++ K+IEFK+ +V+ +G FATW+ST  T  +DLRTFEV A 
Sbjct: 250 EDRLPFFPMGGTFVADIPAIDKKNIEFKINYVSPLGSFATWKSTKQTGSYDLRTFEVHAL 309

Query: 307 PVTPTEGLRMGMSVVVKL 324
           PV   EGLR GMSV+V+L
Sbjct: 310 PVRKVEGLRPGMSVLVEL 327