Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella loihica PV-4

 Score = 73.9 bits (180), Expect = 5e-18
 Identities = 88/310 (28%), Positives = 138/310 (44%), Gaps = 29/310 (9%)

Query: 11  LTAVAVVGWI---GYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEK 67
           L   A +G+I   GY F  A    P+T Q         ++ +V GR+  V V    +V++
Sbjct: 10  LVKFASIGFILLFGY-FLVADLKMPLTTQAMATRTITQVAPQVSGRVVSVQVANNQKVQQ 68

Query: 68  GQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAR-EQQIQAAKDQWLKAQAAAELA 126
           G L+F+L +          +A ++A  AL Q  ++ A  +  I AA  +    + A  L 
Sbjct: 69  GDLLFSLDATPF------LLAQEQAELALEQARQDNAELDAAIAAATAEVNAKEIAYALK 122

Query: 127 EKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEK 186
           ++   R+ +LY +  VS+Q  D+AQT+ +A++    AA    QLAK             K
Sbjct: 123 QREAKRIQSLYANQSVSQQMIDQAQTEVKASRSQLLAA--KAQLAKVQTLRGLPGEDNLK 180

Query: 187 ARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVT-VVDTQDTWAVFN 245
            R A   +++     + T+I++  DG V+ V + SG +  Q  PV+  ++D  D  A F 
Sbjct: 181 LRQAKNRLSQATLALSYTQIRAEHDGVVTNVQLASGNMVNQSTPVMALLLDNVDVIADF- 239

Query: 246 VREDLLKHFTQGAQFTAYLPALNKSIEFKVTHVAVMGDFATWRSTDATQGFDLRTFEVEA 305
            RE  L+H   GA  TA +    +  E     V+         S DA  G     F+   
Sbjct: 240 -REKNLRHIAPGA--TALVAFDGRPGELFQASVS---------SVDA--GVSQAQFDANG 285

Query: 306 RPVTPTEGLR 315
           R  TPTE  R
Sbjct: 286 RLATPTESNR 295