Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 56.6 bits (135), Expect = 1e-12
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 2/180 (1%)

Query: 57  VLVRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQW 116
           ++   GD+VE+GQ++ T+ S  +   L+Q  A  +   +  + A   AR  Q++A +   
Sbjct: 93  LIANPGDKVEQGQVVATIESHSLTNNLKQQQALLEGMQSSLERARLDARRDQLKAIQTLD 152

Query: 117 LKAQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAR 176
           + A+   E A++   R + L    ++S+   ++++ +   AK   + A Q  +L K+   
Sbjct: 153 M-AKVDLEAADRESRRGDQLIESSLISKIDYEKSKDELHKAKLLYAHAQQEAELMKDTLS 211

Query: 177 EETKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVD 236
            E K  A E  R A   VAE+E   A   I +   G +   L        Q  P++TVVD
Sbjct: 212 FELKNKASEVDRQAL-VVAELERQVAALNITAPVGGIIGNWLTEQKARIGQSQPILTVVD 270