Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella loihica PV-4

 Score =  362 bits (928), Expect = e-105
 Identities = 184/312 (58%), Positives = 235/312 (75%)

Query: 8   LMTLTAVAVVGWIGYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEK 67
           L  +  +A+V  + Y    A+ P+   LQGQIE+++Y+ISSKVPGR+ QV+VR+GDQV +
Sbjct: 7   LAIVALIALVAILAYGLMLAHTPKAERLQGQIEAREYNISSKVPGRVAQVMVRRGDQVAE 66

Query: 68  GQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAELAE 127
           G L+F + SPE++AKL QA  G+ AA AL QEA+NGAR+QQ+ A+K+QWLKA+AAA LAE
Sbjct: 67  GDLLFAIDSPELNAKLMQAQGGRDAAKALQQEADNGARKQQVAASKEQWLKAKAAATLAE 126

Query: 128 KTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEKA 187
            TY RV  L+++GV++ QKRDEA TQWQAAKYT+ AA  MYQ+A+EGAREETK AA   A
Sbjct: 127 TTYKRVEALFSEGVLARQKRDEAFTQWQAAKYTQQAAYAMYQMAEEGAREETKAAAEGNA 186

Query: 188 RMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNVR 247
           RMA GAV EV A  AD++++S   GEVS+VL+H GELAP GFPVV+V+D QD WAVF VR
Sbjct: 187 RMAEGAVKEVSAILADSQMRSPKSGEVSEVLLHPGELAPSGFPVVSVIDMQDAWAVFQVR 246

Query: 248 EDLLKHFTQGAQFTAYLPALNKSIEFKVTHVAVMGDFATWRSTDATQGFDLRTFEVEARP 307
           ED LK F  G      +PAL +   FKV H++VMG FATWRST++   FD+RTFE+E RP
Sbjct: 247 EDQLKGFKVGDTLEVEIPALGERYPFKVAHISVMGHFATWRSTESGHDFDMRTFEMELRP 306

Query: 308 VTPTEGLRMGMS 319
           VTP   LR+GM+
Sbjct: 307 VTPIADLRVGMT 318