Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  379 bits (973), Expect = e-110
 Identities = 190/316 (60%), Positives = 243/316 (76%), Gaps = 1/316 (0%)

Query: 8   LMTLTAVAVVGWI-GYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQVE 66
           ++ LTA+  +G I  Y    AY P+P  LQGQIE+++Y++SSKVPGR++QVLVR+GD V 
Sbjct: 6   ILALTALVALGLILAYGLKLAYSPKPSVLQGQIEAREYNVSSKVPGRVEQVLVRRGDSVN 65

Query: 67  KGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAELA 126
           +G L+F + SPE+DAKL QA  G+ AA AL QEA NGAR Q++ AAK+QWLKAQAAA LA
Sbjct: 66  EGDLLFAIHSPELDAKLMQAEGGRDAAKALQQEANNGARSQEVMAAKEQWLKAQAAATLA 125

Query: 127 EKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEK 186
           + TY RV NL+ +GV + QKRDEA TQWQAAKYTE AAL MYQ+A+EGAR ETK AA   
Sbjct: 126 KTTYTRVENLFAEGVAARQKRDEAFTQWQAAKYTEQAALAMYQMAEEGARVETKAAAAGN 185

Query: 187 ARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNV 246
           ARMA GAV EV A  AD+++++   GE+S+VL+ +GELAP GFPVV+++D QD WAVF V
Sbjct: 186 ARMAEGAVKEVSAIMADSQMRAPKSGEISEVLLQAGELAPSGFPVVSLIDMQDAWAVFQV 245

Query: 247 REDLLKHFTQGAQFTAYLPALNKSIEFKVTHVAVMGDFATWRSTDATQGFDLRTFEVEAR 306
           RED LK F +G +    LPAL+K++EF V+H++VMGDFATWRST++   FD+RTFEVE R
Sbjct: 246 REDQLKRFKKGDKLQLTLPALDKTLEFTVSHISVMGDFATWRSTESGHDFDMRTFEVELR 305

Query: 307 PVTPTEGLRMGMSVVV 322
           P  P   LR+GMSV++
Sbjct: 306 PTAPIADLRVGMSVLL 321