Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 53.9 bits (128), Expect = 7e-12
 Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 10/184 (5%)

Query: 57  VLVRKGDQVEKGQLIFTLLSPEIDAKLEQA---IAGQKAAGALAQEAENGAREQQIQAAK 113
           +L   GD V +G ++  L SP +   LEQA   +AG ++A    + A+  AR  Q+QA  
Sbjct: 93  LLSNPGDNVARGDVVAKLDSPRLTNALEQAQSVLAGMQSA---LERAKLDARRSQLQA-- 147

Query: 114 DQWL-KAQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAK 172
           +Q L  A+   E AE+   R   L    ++ +   ++ +     AK     ALQ   L K
Sbjct: 148 NQTLDMAKVDLEAAERERRRGELLIQSKLIGQIDYEKGKDDLHKAKLKFEHALQEVALTK 207

Query: 173 EGAREETKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVV 232
           +    E K  ALE  R    AV E+E       I++  +G +   L           P++
Sbjct: 208 DTLTFEVKNKALEVERQQL-AVRELERQVEALNIKAPVNGIIGNWLTEQKNHLSANQPIL 266

Query: 233 TVVD 236
           TVVD
Sbjct: 267 TVVD 270