Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 53.1 bits (126), Expect = 1e-11
 Identities = 61/235 (25%), Positives = 92/235 (39%), Gaps = 52/235 (22%)

Query: 23  RFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAK 82
           R   +YQ E V            +  ++ G++ ++ V  G  V +GQ++         AK
Sbjct: 47  RLSPSYQSEQVFTGTIRAGNTTGVGFELSGKLSELNVDSGANVHQGQVL---------AK 97

Query: 83  LEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAELAEKTYLRVNNLYNDGVV 142
           L+  +           EAE     Q+IQA+  Q    QA  +LA  T  R   L   G V
Sbjct: 98  LDTRLL----------EAER----QEIQASLAQ---TQADVDLATSTLKRNLELKKSGYV 140

Query: 143 SEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALEKARMAAGAVAEVEAYAA 202
           SEQ  DE QTQ  + +  +   L         A +   Q  L+K+ + A           
Sbjct: 141 SEQLLDETQTQLASLEAAKKRLL---------ASQHANQLKLDKSHLLAP---------- 181

Query: 203 DTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFNVREDLLKHFTQG 257
                  FDG +SQ   + GE+   G P  T+V + +T A   V   +   F+ G
Sbjct: 182 -------FDGIISQRQHNLGEVVAAGSPAFTLVGSMNTEAYIGVPVAIANQFSTG 229