Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., multidrug transporter EmrA from Klebsiella michiganensis M5al

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 88/347 (25%), Positives = 150/347 (43%), Gaps = 43/347 (12%)

Query: 7   TLMTLTAVAVVGWIGYRFYQAYQPEPVTLQGQIESQQYS------ISSKVPGRIDQVLVR 60
           ++ T  A+ +VG +   +  A+Q  P T + Q     Y       IS +V G I +V V+
Sbjct: 21  SIFTAAAIGIVGVLVILY--AWQLPPFTRESQFTDNAYVRGQTTFISPQVNGYITEVKVQ 78

Query: 61  KGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQ 120
             +QV+ G ++F     +ID ++ +    Q  A    +EA     +QQ ++A+    + +
Sbjct: 79  DFNQVKAGDVLF-----QIDERIYKQRVHQAQATLAMKEAALKNNQQQRRSAEAVIARNE 133

Query: 121 AAAELAEKTYL-------RVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKE 173
           AA + A    L       RV  L  DG +S ++RD A+    AA+ T  A ++  +   E
Sbjct: 134 AALQNARAQNLKTQADLKRVQELTADGSLSIRERDSARAS--AAQGT--ADIEQAKATLE 189

Query: 174 GAREETKQAALEKARM---AAGAVAEVEAYAAD---TKIQSWFDGEVSQVLMHSGELAPQ 227
            +R++ +   + +  +    A A A +E    D   T+I +  DG++ Q+ +  G     
Sbjct: 190 MSRQDLQSTIVNRDSLLADVASAKAALELAQIDLQNTRIIAPTDGQLGQISVRLGAYVTA 249

Query: 228 GFPVVTVVDTQDTWAVFNVREDLLKHFTQGAQFTAYLPALNK----------SIEFKVTH 277
           G  + ++V  Q  W + N++E  L     G + T  + ALN           S    V  
Sbjct: 250 GTHLTSLVPPQH-WLIANLKETQLAQVRVGQRVTFTVDALNSEKFTGTVQSISPATGVEF 308

Query: 278 VAVMGDFATWRSTDATQGFDLRTFEVEARPVTPTEGLRMGMSVVVKL 324
            A+  D AT       Q   +R    E +     + LR GMSV V +
Sbjct: 309 SAISPDNATGNFVKIAQRIPVRIAVDEGQ--KNGQRLRPGMSVQVTI 353