Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 60/195 (30%), Positives = 91/195 (46%), Gaps = 8/195 (4%)

Query: 48  SKVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQ 107
           S+  G I ++ V+ GD+VEK ++I  +   E  A+L++A A  + A A A   E  +   
Sbjct: 67  SRFTGIIRKLHVKVGDRVEKDEVIAEIDDREQRAQLDEAEAKLRQAEAEAARVET-SYPL 125

Query: 108 QIQAAKDQWLKAQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAK---YTESAA 164
           QI+ A+ Q   A+A +E A  T  R   L    + +    DEAQ + ++         A 
Sbjct: 126 QIREAEAQVQAARAESEYAALTMERKRKLVEQDLDARNSLDEAQQRSRSLSNVLVAREAT 185

Query: 165 LQMYQLAKEGAREETKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGEL 224
           L   +      R+ T+QAA E+A+ A        +YA    I+S   G VSQV    GE 
Sbjct: 186 LDRLRNEFRTERKRTRQAA-EQAKAALETARIRLSYAV---IRSPISGIVSQVTAPEGET 241

Query: 225 APQGFPVVTVVDTQD 239
              GF VV ++   D
Sbjct: 242 VVAGFQVVNLITILD 256