Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., membrane fusion protein (multidrug efflux system) from Paraburkholderia graminis OAS925

 Score = 70.9 bits (172), Expect = 5e-17
 Identities = 89/333 (26%), Positives = 131/333 (39%), Gaps = 24/333 (7%)

Query: 7   TLMTLTAVAVVGWIGY-RFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQV 65
           T++ + A+AV  W    RFY+       T    +      ++ KV G +  VLVR    V
Sbjct: 32  TVLAVLALAVSYWFFVGRFYET------TDDAYVGGDVTVMAPKVNGFVTNVLVRDNQFV 85

Query: 66  EKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAEL 125
               ++  L + + DA+L QA A  ++A A   E +    ++ +Q A      A+A A  
Sbjct: 86  HANDVLIQLDARDYDARLAQARAEVRSAQAAVIELQ---AKKSLQLATINQQAAEARASG 142

Query: 126 AEKT-----YLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETK 180
           AE T       R   L  D  VS Q  + A      A+     +      A+        
Sbjct: 143 AELTRSAADQTRYRELVKDDAVSNQVVERADADLVKARAAVDRSAAALTAAQRQIAVLDA 202

Query: 181 QAALEKARMAAGAVAE-VEAYAAD-TKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQ 238
           Q    +AR+A    AE V A   + T I++  DG +       G LA  G P++TVV + 
Sbjct: 203 QIGDAEARIATAQAAERVAALNVEYTTIRAPIDGYIGNRTARVGVLASAGVPLLTVVPSG 262

Query: 239 DTWAVFNVREDLLKHFTQGAQFTAYLPALNKSIEFKVTHV--AVMGDFATWRSTDATQGF 296
             W   N +ED LK    G      L A +  I   V  +  A    F+   + +AT  F
Sbjct: 263 GLWIDANFKEDQLKKMRVGDSVDVDLDAFSTPIHGVVESLAPATGATFSVLPAENATGNF 322

Query: 297 DLRTFEVEAR-----PVTPTEGLRMGMSVVVKL 324
                 V  R     P      LR G+S  VK+
Sbjct: 323 TKIVQRVPVRVHLTVPKNMEGALRPGLSATVKV 355