Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  261 bits (667), Expect = 2e-74
 Identities = 146/318 (45%), Positives = 195/318 (61%), Gaps = 7/318 (2%)

Query: 6   TTLMTLTAVAVVGWIGYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQV 65
           T L  +  VAVVG+   R        P  +QGQ E  +Y +SSKVPGRI +  V++G  V
Sbjct: 17  TLLGVIAIVAVVGFFMLR------KGPEIIQGQAEVTEYRVSSKVPGRILEFRVKEGQSV 70

Query: 66  EKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAEL 125
             G  +  L +P++ AK+EQA A + AA A  ++A  GARE+QIQAA + W KAQA   +
Sbjct: 71  NAGDTLAILEAPDVVAKMEQARAAEAAAQAQNEKAIKGAREEQIQAAYEMWQKAQAGVTI 130

Query: 126 AEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALE 185
           AEK+Y RV NLY  GV+  QK DE   Q  AA  TE AA   Y +AK GA  E K AA  
Sbjct: 131 AEKSYKRVKNLYEQGVMPAQKLDEVTAQRDAAIATEKAAKAQYTMAKNGAEREDKMAAEA 190

Query: 186 KARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFN 245
               A GAVAEVE+Y  +T + +   GEVS++    GEL   G P++ + +  D W  FN
Sbjct: 191 LVNRAKGAVAEVESYIKETYLIAPAAGEVSEIFPKVGELVGTGAPIMNIAELNDMWVTFN 250

Query: 246 VREDLLKHFTQGAQFTAYLPAL-NKSIEFKVTHVAVMGDFATWRSTDATQGFDLRTFEVE 304
           VREDLLK+ T GA+F A +PAL NK+++ KV ++  +G +A W++T  T  FDL+TFEV+
Sbjct: 251 VREDLLKNLTMGAEFEAVVPALDNKTVKLKVYYLKDLGTYAAWKATKTTGQFDLKTFEVK 310

Query: 305 ARPVTPTEGLRMGMSVVV 322
           A P+   E LR GMSV++
Sbjct: 311 ASPMEKVENLRPGMSVII 328