Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 51.6 bits (122), Expect = 3e-11
 Identities = 70/285 (24%), Positives = 114/285 (40%), Gaps = 67/285 (23%)

Query: 34  TLQGQIESQQYSISSKVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAA 93
           T++G+   Q   I  +V G I+++ V +G +V +GQL+F +      A L+ A A  +AA
Sbjct: 55  TIRGR---QDIDIYPQVSGTIEKLCVTEGQKVRRGQLLFIIDQVPYRAALKTATANVEAA 111

Query: 94  GALAQEAENGAREQQIQAAKDQWLKAQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQ 153
                                     +AA   AE TY     LY   VVSE     A+  
Sbjct: 112 --------------------------RAATSTAELTYKSNKELYAQKVVSEFSLKTAENS 145

Query: 154 WQAAKYTESAALQMYQLAKEGAREETKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGE 213
           +  AK          QLA+  A+E + +  L                 + T+++S  DG 
Sbjct: 146 YLTAK---------AQLAQAEAQEISARNNL-----------------SYTEVKSPSDGV 179

Query: 214 VSQVLMHSGELAPQG--FPVVTVVDTQDTWAVFNVREDLLKHFTQGAQFTAYLPALNKSI 271
           V  +   +G L      +P+ TV D  D +  F++ E+ L   T+  Q+     AL    
Sbjct: 180 VGALPYRAGALVSANIPYPLTTVSDNSDMYVYFSMTENQLLALTR--QYGDMDEALKNMP 237

Query: 272 EFKVTHVAVMGDFATWRSTDATQG----FDLRTFEVEARPVTPTE 312
           E ++    ++ D + ++     +      D +T  V AR V P E
Sbjct: 238 EVEL----ILNDNSVYQKKGTIESISGVIDRQTGTVVARVVFPNE 278