Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., conserved hypothetical protein, putative membrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  221 bits (564), Expect = 1e-62
 Identities = 122/327 (37%), Positives = 187/327 (57%), Gaps = 6/327 (1%)

Query: 4   VKTTLMTLTAVAVVGWIGYRFYQAY-----QPEPVTLQGQIESQQYSISSKVPGRIDQVL 58
           +K T  TL+   V+  +    + A        +P+ LQGQ E+ +  IS K+PGRID  L
Sbjct: 1   MKPTSRTLSWAFVIIMLAVGIFTALGIILMHKQPLVLQGQAEATEIRISGKLPGRIDTFL 60

Query: 59  VRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLK 118
           V++GD V +G  +  + SPEI AK +Q  A ++ A    ++ + G R Q +  A   W K
Sbjct: 61  VQEGDWVRQGDTLVVINSPEIHAKYQQVNALEQVAVQQNKKIDAGTRRQIVATALQLWNK 120

Query: 119 AQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREE 178
            ++   LA+ TY R+  LY D VV+ Q++DE +  ++AA   E AA + YQ+A +GA++E
Sbjct: 121 TKSDLTLAKTTYNRILTLYKDSVVTSQRKDEVEAMYKAAVAAERAAYEQYQMAVDGAQKE 180

Query: 179 TKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQ 238
            K++A      A   V EV A   D ++ +  +G+++ +    GEL   G P++ +V   
Sbjct: 181 DKESAASMVNAARSTVEEVSALLVDARLTAPENGQIATIFPKRGELVAPGTPIMNLVVMD 240

Query: 239 DTWAVFNVREDLLKHFTQGAQFTAYLPALN-KSIEFKVTHVAVMGDFATWRSTDATQGFD 297
           D   V NVREDL+  F     F A +PA++ K IEFK+ +++ +G FATW+ST  T  +D
Sbjct: 241 DIHVVLNVREDLMPQFKMEGTFVADVPAIDKKGIEFKIYYISPLGSFATWKSTKQTGSYD 300

Query: 298 LRTFEVEARPVTPTEGLRMGMSVVVKL 324
           LRTFE+ ARP    + LR GMSV++ L
Sbjct: 301 LRTFEIHARPTQKVDDLRPGMSVLLTL 327