Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 52.0 bits (123), Expect = 3e-11
 Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 57  VLVRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQW 116
           +L   GD V KG ++  L SP +  +LEQA +      +  + A+  AR  Q+Q   +Q 
Sbjct: 93  LLSNPGDSVSKGDVVAKLESPRLTNQLEQAKSLLAGLESALERAKLDARRNQLQV--NQT 150

Query: 117 L-KAQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGA 175
           L  A    E A++   R + L    ++S+   ++ +     AK     A Q   L K+  
Sbjct: 151 LDMASVDLEAADRESRRGDLLIQSKLISQIDYEKGKDDLHKAKLKFKHAEQEVALTKDTL 210

Query: 176 REETKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVV 235
             E K  ALE  R +  AV E+E       I++   G +   L           P++TVV
Sbjct: 211 TFEVKNKALEVERQSL-AVKELERQVDALNIKAPVSGIIGNWLTEQKTRLSANQPILTVV 269

Query: 236 D 236
           D
Sbjct: 270 D 270