Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 62/256 (24%), Positives = 99/256 (38%), Gaps = 58/256 (22%)

Query: 6   TTLMTLTAVAVVGWIGYRFYQAYQPEPVTLQGQIESQQYSISSKVPGRIDQVLVRKGDQV 65
           T L T+T   +      R   +YQ E V            +  ++ G++ ++ V  G +V
Sbjct: 36  TQLQTVTTAPL------RLSTSYQSEQVFTGTIRAGNTTGVGFELSGKLSELTVDSGAKV 89

Query: 66  EKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAEL 125
            +GQ++  L +  +DA+                        Q+IQA+  Q    QA  +L
Sbjct: 90  TQGQVLAKLDTRLLDAE-----------------------HQEIQASLAQ---TQADVDL 123

Query: 126 AEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGAREETKQAALE 185
           A  T  R   L   G VSEQ  DE +TQ  + +  +   L         A +   Q   +
Sbjct: 124 ATSTLNRNLELKKSGYVSEQLLDENRTQLASLEAAKKRLL---------ASQRANQLKRD 174

Query: 186 KARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVFN 245
           K+++ A                  FDG +SQ   + GE+   G PV T+V + +T A   
Sbjct: 175 KSQLLAP-----------------FDGIISQRQHNLGEVVAAGSPVFTLVGSVNTEAYIG 217

Query: 246 VREDLLKHFTQGAQFT 261
           V   + + F  G   T
Sbjct: 218 VPVAVAQQFVNGQNVT 233