Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., channel protein TolC from Pseudomonas fluorescens FW300-N2C3

 Score = 63.2 bits (152), Expect = 2e-14
 Identities = 106/480 (22%), Positives = 187/480 (38%), Gaps = 76/480 (15%)

Query: 5   SLSLAI-CSILFMPIAHAAPLS--------FQEAWDLLQQQNNSLAAQRANVERYAHLKD 55
           SL+LA+ C+   M  A  APL+        +QEA D     N  LAA RA       +  
Sbjct: 6   SLALAVSCASNGMAWAAEAPLTTKTDLVSVYQEAVD----NNADLAAARAQYGVQKEVVP 61

Query: 56  ATQNLNLPSVSVGA--NFTRLDQDVTLSGKQIVDSAGGIDPNLIASLSPSLLPLVTHLGA 113
             +   LP++S GA  N TR + D                P + A+ S ++         
Sbjct: 62  QARAGLLPNLSAGADLNNTRTELD---------------QPAMTATRSSTVY-------- 98

Query: 114 AKSTITERDIFTSSIRAIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYEDLAKYY 173
            ++T+++            PIF   R    Q AA    E+A  QL+   Q      A+ Y
Sbjct: 99  -QATLSQ------------PIFRADRWFQLQ-AAKSVNEQASLQLSATEQNMILQSAESY 144

Query: 174 FSVVLAKEVLATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKAQK 233
           F+V+ +++ LA+  A E    +  D + +    G     + LQ+ AS D A+  R  AQ+
Sbjct: 145 FNVLRSQDNLASTKAEEAAFKRQLDQSNERFDVGLSDKTDVLQSQASYDTARANRILAQR 204

Query: 234 TLDIAQSALTQILGATETVEPSGMLFINTSLPP--------MHAFIEQTLNTYPGLSLLD 285
            +D A  AL  +    +     G++     LPP        +    +Q LN       +D
Sbjct: 205 QVDDAFEALITLTN-RQYNSLQGIVHTLPILPPAPNDAKAWVDTAAKQNLNLLASNYAVD 263

Query: 286 AKEKQASSLIKAEQGKYYPEVYLYGDYSLHEDDSLA-SQMKP----------DWLVGVGV 334
           A    A   ++  +  + P +     Y   ++D L  +   P             +G+ +
Sbjct: 264 A----AEDTLRQRKAGHAPTLDAIAQYKKGDNDGLGFTNPSPTGQRYGGDAEQRTIGLQL 319

Query: 335 NIPLIENSGRSEQVKAANSAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSL 394
           +IP+      S QV+ + S + Q    +   ++ +       +      +E+V     S+
Sbjct: 320 SIPIYSGGLTSSQVRESYSQLTQTEQQREGLRRQVVENTRNLHRAVNTDVEQVQARRQSI 379

Query: 395 NLAQENLRLRQKAFSQGLSTSVDVVDAELYLASIRTQQSLASFNYLISLNKLLALSSEMS 454
              Q  +   +  +  G    VDV+DA+  L +     + A ++Y++   +L   +  +S
Sbjct: 380 ISNQSAVEATEIGYQVGTRNIVDVLDAQRQLYTSVRNYNNARYDYILDNLRLKQAAGTLS 439