Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., Type I secretion outer membrane protein, TolC from Pseudomonas syringae pv. syringae B728a

 Score = 64.3 bits (155), Expect = 9e-15
 Identities = 76/330 (23%), Positives = 135/330 (40%), Gaps = 29/330 (8%)

Query: 133 PIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYEDL----AKYYFSVVLAKEVLATRIA 188
           PIF   R    Q A A  E     Q A+E+ A  ++L    A+ YFSV+ A++ LA+  A
Sbjct: 105 PIFRADRWFQLQAAEASNE-----QAALELSATEQNLILQSAQSYFSVLRAQDNLASTKA 159

Query: 189 VEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKAQKTLDIAQSALTQILGA 248
            E    +  D A +    G     + LQA AS D ++  R  AQ+ ++ A  AL  +   
Sbjct: 160 EEAAFKRQLDQANERFDVGLSDKTDVLQAQASYDTSRASRLIAQRQVEDAFQALVTLTN- 218

Query: 249 TETVEPSGMLFINTSLPP----MHAFIEQTLNTYPGLSLLDAKEKQASSLIKAEQGKYYP 304
            E     G++     L P      A+++        L   +     A   ++  +  + P
Sbjct: 219 REYNSIEGIVHTLPVLAPTPNDAKAWVDTAAQQNLNLLASNYAVNAAEETLRQRKAGHAP 278

Query: 305 EVYLYGDYSLHEDDSLASQMKPDWL------------VGVGVNIPLIENSGRSEQVKAAN 352
            +     Y   ++D+L     P++             +GV +NIP+      S QV+ A 
Sbjct: 279 TLDAVATYQRGDNDALGFS-NPNYTGRNYGGDVEQRSIGVQLNIPIYSGGLTSSQVREAY 337

Query: 353 SAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQKAFSQGL 412
           + ++Q    +   ++ +       +      +E+V     S+   Q  L   +  +  G 
Sbjct: 338 ARLSQSEQRRESLRRQVVENTRNLHRAVNTDVEQVQARKQSIISNQSALEATEIGYQVGT 397

Query: 413 STSVDVVDAELYL-ASIRTQQSLASFNYLI 441
              VDV+DA+  L AS+R   +   ++Y++
Sbjct: 398 RNIVDVLDAQRQLYASVRDYNN-TRYDYIL 426



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 20/105 (19%), Positives = 45/105 (42%)

Query: 347 QVKAANSAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQK 406
           Q++AA ++  Q     +  +Q+L +   ++Y    +A + +    +     +  L    +
Sbjct: 114 QLQAAEASNEQAALELSATEQNLILQSAQSYFSVLRAQDNLASTKAEEAAFKRQLDQANE 173

Query: 407 AFSQGLSTSVDVVDAELYLASIRTQQSLASFNYLISLNKLLALSS 451
            F  GLS   DV+ A+    + R  + +A      +   L+ L++
Sbjct: 174 RFDVGLSDKTDVLQAQASYDTSRASRLIAQRQVEDAFQALVTLTN 218