Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 538 a.a., Type I secretion outer membrane protein, TolC (NCBI) from Rhodospirillum rubrum S1H

 Score = 81.6 bits (200), Expect = 6e-20
 Identities = 105/470 (22%), Positives = 194/470 (41%), Gaps = 61/470 (12%)

Query: 1   MKVKSLSLAICSILFMPIAHAAPL---SFQEAWDLLQQQNNSLAAQRANVERYAHLKDAT 57
           + +K +S+A+ S+L   +  ++P+   +F EA     Q N +L A+RA +          
Sbjct: 52  LMIKPVSIAVASLLVAGLGLSSPVMAETFDEALVSAYQANPTLQARRALLRAVDEQVPQA 111

Query: 58  QNLNLPSVSVGAN--FTRLDQDVTLSGKQIVDSAGGIDPNLIASLSPSLLPLVTHLGAAK 115
            +   P VSV  +  + ++D +    G++ +D+             P+ L +V       
Sbjct: 112 LSDWRPQVSVQGSTFYQQMDYE---PGRKNLDNR------------PATLGVVLQQN--- 153

Query: 116 STITERDIFTSSIRAIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYEDLAKYYFS 175
                             IF G R  A  D A  + +  ++ L    Q    + A+ YF+
Sbjct: 154 ------------------IFRGLRTVAQTDQAKAQVQSERALLRSVEQTVLLNAAQAYFN 195

Query: 176 VVLAKEVLATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKAQKTL 235
           V+  + VL   I  E+ L +  D A    + G+I   +  QAD+ L  A  +R +A+ TL
Sbjct: 196 VIRDQAVLELNINNEQVLRRQLDAANDRFRVGEITRTDVAQADSRLAGAIADRIQAEGTL 255

Query: 236 DIAQSALTQILG-ATETVEPSGMLFINTSLPPMHAFIEQTLNTYPGLSLLDAKE------ 288
           + +++  TQ++G   E ++P          PP +A + QTL      +L    +      
Sbjct: 256 ESSRANYTQVVGHPPENIQP----------PPPYARLPQTLEDGLNTALSANPDVIAALY 305

Query: 289 --KQASSLIKAEQGKYYPEVYLYGDYSLHEDDSLASQM-KPDWLVGVGVNIPLIENSGRS 345
             +QA + I+ ++GK  P +     YS   + S  ++     +  G+ + +PL +     
Sbjct: 306 VWRQAQAAIRDQRGKLLPTLNAEVSYSFSHNPSATTEYDTKTFQAGLNLTVPLYQGGAVY 365

Query: 346 EQVKAANSAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQ 405
            Q++ A     Q R    + ++ +   +   +     A   V+   S +  A   L   Q
Sbjct: 366 SQIRDAKHRAGQRRLQVDEQREAVIESLTSAWETLTSARARVSSYKSQIEAAGIALDGVQ 425

Query: 406 KAFSQGLSTSVDVVDAELYLASIRTQQSLASFNYLISLNKLLALSSEMSS 455
           +    G  T +DV+DAE  L + R     A  +  IS  ++LA    M++
Sbjct: 426 REAQVGSRTVLDVLDAEQELLTSRVNLVRAERDSAISTYEVLAALGAMTA 475



 Score = 28.9 bits (63), Expect = 5e-04
 Identities = 37/173 (21%), Positives = 75/173 (43%), Gaps = 6/173 (3%)

Query: 85  IVDSAGGIDPNLIASLSPSLLPLVTHLGAAKSTITERDIFTSSIRAIWPIFTGGRITAAQ 144
           I D  G + P L A +S S     +H  +A +T  +   F + +    P++ GG + +  
Sbjct: 314 IRDQRGKLLPTLNAEVSYSF----SHNPSA-TTEYDTKTFQAGLNLTVPLYQGGAVYSQI 368

Query: 145 DAAAGKEEEAQSQLAMEIQARYEDLAKYYFSVVLAKEVLATRIAVEEGLTQHRDNALKLE 204
             A  +  + + Q+  + +A  E L   + ++  A+  +++  +  E      D   +  
Sbjct: 369 RDAKHRAGQRRLQVDEQREAVIESLTSAWETLTSARARVSSYKSQIEAAGIALDGVQREA 428

Query: 205 QQGQIAHVERLQADASLDKAKVERKKAQKTLDIAQSALTQILGATETVEPSGM 257
           Q G    ++ L A+  L  ++V   +A++   I+   +   LGA  T E  G+
Sbjct: 429 QVGSRTVLDVLDAEQELLTSRVNLVRAERDSAISTYEVLAALGAM-TAEDLGL 480