Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., outer membrane efflux protein (RefSeq) from Shewanella loihica PV-4

 Score =  352 bits (904), Expect = e-101
 Identities = 195/459 (42%), Positives = 300/459 (65%), Gaps = 17/459 (3%)

Query: 19  AHAAPLSFQEAWDLLQQQNNSLAAQRANVERYAHLKDATQNLNLPSVSVGANFTRLDQDV 78
           A A  L+F +AW  L Q ++ L A +  V R    K A ++LNLPS+S+  ++TRL++ +
Sbjct: 19  AQAKELAFGDAWQQLLQVSDKLQASQQEVNRAQAEKAAGEDLNLPSLSINGSYTRLEKPL 78

Query: 79  TLSGKQIVDSAGGIDPNLIASLSPSLLP--LVTHLGAAKSTI-----TERDIFTSSIRAI 131
            L  +         D N +ASL P+ LP  L   LGA   ++     TE+D+F SS++A+
Sbjct: 79  ELDLR---------DLNPLASLDPATLPPALGGALGAIPGSLFITPFTEQDVFRSSLQAM 129

Query: 132 WPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYEDLAKYYFSVVLAKEVLATRIAVEE 191
           WPI+TGGRI+AAQ     +  E + Q  +  +  +  L   Y+ V ++  ++ATR  + +
Sbjct: 130 WPIYTGGRISAAQGIHEAQVAEKEQQHQLSTRDLFVQLVDRYYGVAVSHALMATRGQLVD 189

Query: 192 GLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKAQKTLDIAQSALTQILGATET 251
            LT+H ++A+KLEQQGQIA VERL A  +L+ A+V+   A++ L+++Q AL+++L  ++ 
Sbjct: 190 ALTEHAEHAVKLEQQGQIAKVERLNAQVALENARVDYASAKRQLEMSQIALSRMLHQSD- 248

Query: 252 VEPSGMLFINTSLPPMHAFIEQTLNTYPGLSLLDAKEKQASSLIKAEQGKYYPEVYLYGD 311
           V+ +  LF+  + P +    + TL ++P L LL+AKE QA+ LI  E+G YYP V+LYG+
Sbjct: 249 VDTASKLFLLDNPPSLGLLSQLTLTSHPALKLLEAKETQANGLIDVEKGSYYPSVFLYGN 308

Query: 312 YSLHEDDSLASQMKPDWLVGVGVNIPLIENSGRSEQVKAANSAVNQVRYLKAQAKQDLSV 371
           Y+L+EDDSL ++M+PDW+VGVGV IPLI   GRS +V+AA SA+ Q RY KAQ +QDLS+
Sbjct: 309 YTLYEDDSLLAKMEPDWMVGVGVKIPLISRDGRSGKVEAARSALLQARYTKAQTQQDLSL 368

Query: 372 LVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQKAFSQGLSTSVDVVDAELYLASIRTQ 431
           L++++Y + +QA EE   L+ SL+LA+EN RLR  AFSQGLSTS++ VDAEL L+ ++TQ
Sbjct: 369 LLDQSYRQLQQAREETESLDLSLSLAKENKRLRDLAFSQGLSTSIEKVDAELKLSGVQTQ 428

Query: 432 QSLASFNYLISLNKLLALSSEMSSFSTYHQSAVALSSLH 470
           Q  A + Y+ +  +L+A+S ++  F    ++A   +  H
Sbjct: 429 QLAAQYRYVQAYARLMAISGQLDEFIGRSRTAQERADAH 467