Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 525 a.a., outer membrane efflux protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 62.4 bits (150), Expect = 4e-14
 Identities = 86/441 (19%), Positives = 176/441 (39%), Gaps = 50/441 (11%)

Query: 23  PLSFQEAWDLLQQQNNSLAAQRANVERYAHLKDATQNLNLPSVSVGANFTRLDQDVTL-- 80
           PL   +   L  + N + AA R  +           +   P ++     TRLD+D     
Sbjct: 77  PLELAQCIALALRNNAAPAAAREGLAIAEAQHRQALSAYWPQLAATYTQTRLDRDPAFVY 136

Query: 81  ---SGKQIVDSAGGIDPNLIASLSPSLLPLVTHLGAAKSTITERDI--FTSSIRAIWPIF 135
              S    VD  GG             + + T +   +  + +RDI  F + +  +  ++
Sbjct: 137 PEDSFNYTVDMGGGP------------MTMRTTVPERRIRLADRDIGEFRADLGLL--LY 182

Query: 136 TGGR-------ITAAQDAAAGKEEEAQSQLAMEIQARYEDLAKYYFSVVLAKEVLATRIA 188
            GGR         A +DAA G+      QL  ++  RY       + VVLA+ +      
Sbjct: 183 DGGRREARVREAVAGRDAAVGEARLTSLQLVHDVTTRY-------YGVVLARALRDIGRE 235

Query: 189 VEEGLTQHRDNALKLEQQG--QIAHVERLQADASLDKAKVERKKAQKTLDIAQSALTQIL 246
             +     R+ A    + G  ++   + L+A  ++   K    +    +++A+SAL   L
Sbjct: 236 TVQRFEATREVAEHFYRGGSQRVRKTDWLRARVAVSGMKARLAELDSNVELAESALANTL 295

Query: 247 GATETVEPSGMLFINTSLPPMHA------FIEQTLNTYPGLSLLDAKEKQASSLIKAEQG 300
           G         +   +T LP   A       +         L+  DA  + A + +    G
Sbjct: 296 GLAWD---DRVRVADTELPAAPAPGDLDGAVADAYRLNLDLARFDAGARAAEAGLDDATG 352

Query: 301 KYYPEVYLYGDYSL----HEDDSLASQMKPDWLVGVGVNIPLIENSGRSEQVKAANSAVN 356
           +Y P V L+G  S     ++   +    +     G+ V +PL E      +V+   + + 
Sbjct: 353 EYLPVVSLFGTLSTVTNSYDGGLVGEGERTRGAAGLTVELPLFEGFRTRARVEEMRARLR 412

Query: 357 QVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQKAFSQGLSTSV 416
           Q+ + +   ++ +++ V+   L+  +A  +      ++ +A E+  L ++A+ +GL  + 
Sbjct: 413 QLAHQRVLLREGVALRVKDAVLQERRAARQADIGAETVAVAGESRALTERAYREGLVDTR 472

Query: 417 DVVDAELYLASIRTQQSLASF 437
           ++++A++Y + +R  +  A +
Sbjct: 473 ELLEAQIYESMVRAARLRALY 493