Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., outer membrane efflux protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  345 bits (886), Expect = 1e-99
 Identities = 194/456 (42%), Positives = 296/456 (64%), Gaps = 22/456 (4%)

Query: 11  CSILFMPIA-HAAPLSFQEAWDLLQQQNNSLAAQRANVERYAHLKDATQNLNLPSVSVGA 69
           C     P+A +A P SF EAW  + + ++ L AQ   V R    ++A ++LNLPS+S+  
Sbjct: 13  CLPSLAPLATYAQPSSFTEAWQQVLKVSDKLQAQSQEVNRAKGEQEAGESLNLPSLSLNG 72

Query: 70  NFTRLDQDVTLSGKQIVDSAGGIDPNLIASLSPSLLPLVTHLGAAKSTI---------TE 120
           ++T L++ + L  +         D N +ASL P+ LP    LG A ++I         TE
Sbjct: 73  SYTHLEKPIELDLR---------DLNPLASLDPATLPPA--LGGALASIPGSLFVTPFTE 121

Query: 121 RDIFTSSIRAIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYEDLAKYYFSVVLAK 180
           +DIF +S++A+WPI+TGG+ITAAQ   A    E Q +L +  +  +  L   Y++V + +
Sbjct: 122 QDIFRASLQAMWPIYTGGQITAAQGIHAAMVAEKQQELQLASRDLFTQLVDRYYAVDVTQ 181

Query: 181 EVLATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKAQKTLDIAQS 240
            ++ T+  +   LT+H D+AL LE++GQIA VERL A  +LD AKV    A++  ++A  
Sbjct: 182 SLVNTQTELVASLTKHVDHALALEREGQIAKVERLNAQVALDNAKVNLGSARRQHEMAVI 241

Query: 241 ALTQILGATETVEPSGMLFINTSLPPMHAFIEQTLNTYPGLSLLDAKEKQASSLIKAEQG 300
           AL+++L  ++ V  +  LF+    P +    + TLN +P L LL+AKE QA+ L+  E+G
Sbjct: 242 ALSRMLQQSD-VSTNSPLFVLPQAPSLGDLTQMTLNQHPALKLLEAKEAQANGLVSLEKG 300

Query: 301 KYYPEVYLYGDYSLHEDDSLASQMKPDWLVGVGVNIPLIENSGRSEQVKAANSAVNQVRY 360
           KY+P V+L+G+Y+L+EDDSL S+++PDW+VGVGV +PL+   GRS +V+AA SA+ Q RY
Sbjct: 301 KYHPTVFLFGNYTLYEDDSLFSKVEPDWMVGVGVKVPLLSRDGRSGKVEAAKSALLQARY 360

Query: 361 LKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQKAFSQGLSTSVDVVD 420
            KAQ +QDLS+L++++Y +  QA EEV  LN+SL LA ENLRLR+ AF+QGLSTS+D VD
Sbjct: 361 TKAQTRQDLSLLLDQSYRQLLQAEEEVNSLNTSLELASENLRLREIAFNQGLSTSIDRVD 420

Query: 421 AELYLASIRTQQSLASFNYLISLNKLLALSSEMSSF 456
           AEL L++++TQQ  A + Y+ +  +L+A+S ++  F
Sbjct: 421 AELKLSAVKTQQLGARYRYVQAYARLMAISGQLDEF 456