Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., outer membrane efflux protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 78.2 bits (191), Expect = 5e-19
 Identities = 77/353 (21%), Positives = 150/353 (42%), Gaps = 30/353 (8%)

Query: 120 ERDIFTSSIRAIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYEDLAKYYFSVVLA 179
           + D +T ++    P+FTG  I +    AA +++  +++L+           K   ++ LA
Sbjct: 91  DNDTYTWTMGVRQPLFTGFNILSTYQKAALEKDRKEAELS-----------KTRLTLALA 139

Query: 180 -KEVLATRIAVEEGLTQHRDNALKLEQQGQIAH----------VERLQADASLDKAKVER 228
            ++   T +  ++ +    D  ++L  Q ++            ++ LQA+  L KA+ + 
Sbjct: 140 VQQAFLTYLKAQQDVRSANDALVRLRDQLKVTQAFYDVGLRPRLDVLQAEVDLSKAETDF 199

Query: 229 KKAQKTLDIAQSALTQILGA-TETVEP-SGMLFINTSLPPMHAFIEQTLNTYPGLSLLDA 286
            KA+  LD  ++ L  +L    ET    SG L       P  A +EQ     P + +   
Sbjct: 200 IKAENALDTQKARLNTLLALPVETASSFSGTLEYRPFTRPFEACLEQAYRQRPDMHMAAK 259

Query: 287 KEKQASSLIKAEQGKYYPEVYLYGDYSLHEDDSLASQMKPD------WLVGVGVNIPLIE 340
             + A          YYP+V    D++   D   AS    D      W   V  ++ + E
Sbjct: 260 AIEIAGKDTTIASSGYYPQVSAGFDWATQGDHPEASGSTLDRTGYTQWSTNVTASMNVFE 319

Query: 341 NSGRSEQVKAANSAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQEN 400
                  V+ A    ++VR  +A  +Q+++  V+   L   ++ + +   + +L+ A E 
Sbjct: 320 WGRTYYGVQQAKQIESKVRADEANLRQEIAYEVKSRLLAISESGKRIVVAHKALDQAHEA 379

Query: 401 LRLRQKAFSQGLSTSVDVVDAELYLASIRTQQSLASFNYLISLNKLLALSSEM 453
            R+    +   + T+ DV+DA+  L +     + A  +YL++L +L A   E+
Sbjct: 380 YRMALARYQAQVGTNTDVLDAQAKLTAAEAGLTGAKADYLVALAQLYASLGEL 432