Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., putative alkaline protease aprF (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 89.7 bits (221), Expect = 2e-22
 Identities = 100/466 (21%), Positives = 190/466 (40%), Gaps = 50/466 (10%)

Query: 5   SLSLAICSILFMPIAHAAPLSFQEAWDLLQQQNNSLAAQRANVERYAHLKDATQNLNLPS 64
           SL+  + +  F+ +     L+     DLL      ++ ++ N   Y H K A  N  LPS
Sbjct: 12  SLTFIVKAQSFLSLDSCRALALANNKDLL------ISNEKINAAHYQH-KAAFTNY-LPS 63

Query: 65  VSVGANFTRLDQDVTLSGKQIVDSAGGIDPNL----------IASLSPSLLPLVTHL--- 111
            S    + R  ++ +L       +  G+  NL          IA+  P L PL+  L   
Sbjct: 64  FSATGTYMRNQKEFSLLNNDQKAALSGLGTNLAGPIQQTATEIATAHPELRPLIASLSEK 123

Query: 112 -GAAKSTITE-------------RDIFTSSIRAIWPIFTGGRITAAQDAAAGKEEEAQSQ 157
            GAA   + +             R+++  +I    P++ GG+I A        EE AQ Q
Sbjct: 124 LGAALPALDQAGNSLVDALRTDTRNVYAGAITLTQPLYMGGKIRAYNKITKYAEELAQQQ 183

Query: 158 LAMEIQARYEDLAKYYFSVVLAKEVLATRIAVEEG----LTQHRDNALKLEQQGQIAHVE 213
               +Q       + Y+ V+     L  +  + EG    L Q   +  K+  +G     +
Sbjct: 184 HQGGMQEVIMSTDQAYWQVIS----LVNKKKLAEGYLKLLQQLDSDVEKMIAEGVATKAD 239

Query: 214 RLQADASLDKAKVERKKAQKTLDIAQSALTQILG----ATETVEPSGMLFINTSLPPMHA 269
            L     +++A++   K +  L +A+  L Q+ G    +  T+    M  I    P  H 
Sbjct: 240 GLSVRVKVNEAEMTLTKVEDGLSLARMLLCQLCGIDLSSPITLADENMEDIPLLTPETHF 299

Query: 270 FIEQTLNTYPGLSLLDAKEKQASSLIKAEQGKYYPEVYLYGDYSLHED---DSLASQMKP 326
            +       P +  L+   +     I   + ++ P + L G+Y +      +S  ++ K 
Sbjct: 300 DMSTAYANRPEIRSLELATQIYKQKINVTRAEHLPSIALMGNYMVTNPSVFNSFENKFKG 359

Query: 327 DWLVGVGVNIPLIENSGRSEQVKAANSAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEE 386
            W VGV V IP+        + KAA +     +Y    A++ + + V ++  + ++A ++
Sbjct: 360 MWNVGVMVQIPIWHWGEGIYKTKAAKAEARIAQYQLQDAREKIELQVNQSAFKVKEASKK 419

Query: 387 VTGLNSSLNLAQENLRLRQKAFSQGLSTSVDVVDAELYLASIRTQQ 432
           +     ++  A ENLR     F +G+  + +V++A+    S ++++
Sbjct: 420 LVMATKNMEKADENLRYATLGFKEGVIATSNVLEAQTAWLSAQSEK 465



 Score = 28.1 bits (61), Expect = 7e-04
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 354 AVNQV-RYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQKAFSQ-- 410
           A N++ +Y +  A+Q     +++  +  +QA  +V  L +   LA+  L+L Q+  S   
Sbjct: 168 AYNKITKYAEELAQQQHQGGMQEVIMSTDQAYWQVISLVNKKKLAEGYLKLLQQLDSDVE 227

Query: 411 ------------GLSTSVDVVDAELYLASIRTQQSLA 435
                       GLS  V V +AE+ L  +    SLA
Sbjct: 228 KMIAEGVATKADGLSVRVKVNEAEMTLTKVEDGLSLA 264